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Report for CCDS90521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90521.1 Public Mus musculus 9 Gm1110 23 108 98 CCDS HistoryNCBI Gene:382064Re-query CCDS DB by CCDS ID:90521.1Re-query CCDS DB by GeneID:382064See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 90521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115261.2 ENSMUSP00000110916.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115261.2Link to Ensembl Protein Viewer:ENSMUSP00000110916.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115261Re-query CCDS DB by Protein ID:ENSMUSP00000110916
Original member Current member NCBI NM_001281475.1 NP_001268404.1 Accepted alive Link to Nucleotide Sequence:NM_001281475.1Link to Protein Sequence:NP_001268404.1Re-query CCDS DB by Nucleotide ID:NM_001281475Re-query CCDS DB by Protein ID:NP_001268404Link to BLAST:NP_001268404.1

Chromosomal Locations for CCDS 90521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 26879956 26879963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26880823 26880886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26880997 26881113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26881760 26881871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26882324 26882411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26883210 26883297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26883758 26883826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26889535 26889681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26893551 26893657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26894247 26894327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26895650 26895787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26896600 26896684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26897918 26897982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26898962 26899043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26902425 26902517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26912346 26912454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26913288 26913383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26914303 26914371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26920564 26920761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26921304 26921395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGTGGGCCTTCCTGGGGAGACCTGAATGCATTCTGTGTCTGTCTTCAGCCTTATGTGCGATGGCTCTGC
TCAGCAATAACGAGTTTTCCAGGCTTAATCAAACTCACTTGACCCCCTTGTTGCTGATAAACCGAAAAGT
AGGTCTGCAAGTCAAGGACTCACAATTCACACTGGAAGGTTTTCCATTCCGGATCATCTCTGGCACTATA
GACTACTTCCGGATACCTAGGAACTCCTGGAGACTCAGTTTGAGGAAGATGCAGGCCGGTGGCTTCAATA
CTCTTACCACGCATATTCCTTGGAACCTCCACGAGCCGGCAGTTGGCCAGTTTTATTTCACTGAAAACAC
AGACCTCATAGCTTTTATCACCATGGCTTCACAGTCGGGACTCTGGGTCATTCTGTGTCCGGGCCCCTAC
ATTGGCAGTGACTTAGACCTTGGAGGCTTGCCCAGCTGGTTACTCAAGGATCCAAAAATGAAGCTGCGGA
CAACTTACAAGGGATTTACTAAAGCAATGAATCGGTATTTCGACAATCTGATTCCCAAGATAGCAAAATT
CCAGTATAAGAAAGGCGGCCCCATCATTGCCGTGCAAGTTGAGAATGAATATGGTTCCTACTATATGGAT
AAGAAATACATGGCATATGTGAAAACGGCTTTAGTGTCAAGAGGAATTGATGAGCTGCTCATGACTGCAG
ATGATGGTGTGAGTCTAAGAAAGGGCCACTTGGAAAACGTGCTGGCCACTGTTCACATGAAGAATATAAA
GAAAGAAACATTTGGAGACCTCAGATCTATTCAGGGTAAAAGCCCTATTCTGATGATGGTATATACAACC
AAGTCTTTTGACACATGGGGAACTCTGCACCAGACTGGAGATGCACAGATGCTGCTGAAGGATGTCCATG
AGATGTTCCACCTCGGGTTCTCCCTCAACTTCTACATGTTCCAAGGTGGTACCAACTTTGGCTTAATTGG
TGGAGCTCAGTCTTCAGAGGGTTACAAGCCTGTAGTAACCAGCTATGACTACAATGCACTGGTGTCAGAA
GGTGGAGAATATACAGTCCAGTACCGGGAATTTCAACGTTTTTTCCATTCTGTTACAGACAGTCACTTGA
CCGTTCAACCAAAAACTACACAGATGTTTGCCTATCAGCCAGTGACACTGTTATATTTCATGACCCTGTG
GGAATTCCTGCCCAATCTGGTTAAGACAACCAAGTCTTCCAAGCCCCTATCCATGGAGCAGCTGCGGGTG
AATGAAAGAAGTGGCCAGTCCTTTGGATATATACTTTATGAGACTGTCATCTTCAGTGGAGGCCTCATCA
CATCAAGGGGTCATATTCGAGACCGAGGGCAGGTGTTTTTGGATAACATCTATATAGGACTCCTGGATCA
ATCCAACAGTGAGCTGCTTCTTTACAAAGATGTCTCCAAGAAAAGTCAGATTCTCAGGATCCTGGTGGAG
AACCAAGGTCGACTCACTTCTGGGCAGGATATCAACAAGGAGAGAAAAGGTTTAACTGGGGACATCTATC
TAGACAAGTCTCCACTGAGACCATTTAAAATCTACAGCCTGGAAATGAACAATATATTCATACAAAGGGA
ATTTCCCAATTCCTGGCAAAGGGTGACAAGCCAAGTCCAGGGACCTGCCTTTTTCCTCAGTTACTTGAAA
GCAGGGGATCCTCCCCAGGACACCTTCATGAAAATACAAGGCTGGGGAAAAGGTGTCATATCCATTAATG
GAAGGAGCCTGGGACGATACTGGAACATTGGCCCCCAGGAAACTGTCTTTGTCCCTGGCTCCTGGCTTCA
ACCTGGAGTTAATAAGATCATAATGTTTGAGGAATTGAAAGGTGACGAAAAGATTCACTTTTCAACCAAG
GCTCAACTAGGACATTGA

Translation (635 aa):
MWAFLGRPECILCLSSALCAMALLSNNEFSRLNQTHLTPLLLINRKVGLQVKDSQFTLEGFPFRIISGTI
DYFRIPRNSWRLSLRKMQAGGFNTLTTHIPWNLHEPAVGQFYFTENTDLIAFITMASQSGLWVILCPGPY
IGSDLDLGGLPSWLLKDPKMKLRTTYKGFTKAMNRYFDNLIPKIAKFQYKKGGPIIAVQVENEYGSYYMD
KKYMAYVKTALVSRGIDELLMTADDGVSLRKGHLENVLATVHMKNIKKETFGDLRSIQGKSPILMMVYTT
KSFDTWGTLHQTGDAQMLLKDVHEMFHLGFSLNFYMFQGGTNFGLIGGAQSSEGYKPVVTSYDYNALVSE
GGEYTVQYREFQRFFHSVTDSHLTVQPKTTQMFAYQPVTLLYFMTLWEFLPNLVKTTKSSKPLSMEQLRV
NERSGQSFGYILYETVIFSGGLITSRGHIRDRGQVFLDNIYIGLLDQSNSELLLYKDVSKKSQILRILVE
NQGRLTSGQDINKERKGLTGDIYLDKSPLRPFKIYSLEMNNIFIQREFPNSWQRVTSQVQGPAFFLSYLK
AGDPPQDTFMKIQGWGKGVISINGRSLGRYWNIGPQETVFVPGSWLQPGVNKIIMFEELKGDEKIHFSTK
AQLGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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