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Report for CCDS8884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8884.1 Public Homo sapiens 12 DCD 24 110 108 CCDS HistoryNCBI Gene:117159Re-query CCDS DB by CCDS ID:8884.1Re-query CCDS DB by GeneID:117159See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8884.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293371.11 ENSP00000293371.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293371.11Link to Ensembl Protein Viewer:ENSP00000293371.6Re-query CCDS DB by Nucleotide ID:ENST00000293371Re-query CCDS DB by Protein ID:ENSP00000293371
Original member Current member NCBI NM_053283.4 NP_444513.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053283.4Link to Protein Sequence:NP_444513.1Re-query CCDS DB by Nucleotide ID:NM_053283Re-query CCDS DB by Protein ID:NP_444513Link to BLAST:NP_444513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444513.1 110 P81605-1 110 100% 0 0

Chromosomal Locations for CCDS 8884.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54644713 54644756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54645173 54645262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54645606 54645707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54647121 54647159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54648246 54648303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGAGGTTCATGACTCTCCTCTTCCTGACAGCTCTGGCAGGAGCCCTGGTCTGTGCCTATGATCCAGAGG
CCGCCTCTGCCCCAGGATCGGGGAACCCTTGCCATGAAGCATCAGCAGCTCAAAAGGAAAATGCAGGTGA
AGACCCAGGGTTAGCCAGACAGGCACCAAAGCCAAGGAAGCAGAGATCCAGCCTTCTGGAAAAAGGCCTA
GACGGAGCAAAAAAAGCTGTGGGGGGACTCGGAAAACTAGGAAAAGATGCAGTCGAAGATCTAGAAAGCG
TGGGTAAAGGAGCCGTCCATGACGTTAAAGACGTCCTTGACTCAGTACTATAG

Translation (110 aa):
MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGL
DGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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