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Report for CCDS8750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8750.1 Public Homo sapiens 12 SLC38A4 24 110 108 CCDS HistoryNCBI Gene:55089Re-query CCDS DB by CCDS ID:8750.1Re-query CCDS DB by GeneID:55089See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8750.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266579.9 ENSP00000266579.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266579.9Link to Ensembl Protein Viewer:ENSP00000266579.4Re-query CCDS DB by Nucleotide ID:ENST00000266579Re-query CCDS DB by Protein ID:ENSP00000266579
Original member Current member EBI ENST00000447411.5 ENSP00000389843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447411.5Link to Ensembl Protein Viewer:ENSP00000389843.1Re-query CCDS DB by Nucleotide ID:ENST00000447411Re-query CCDS DB by Protein ID:ENSP00000389843
Original member Current member NCBI NM_001143824.2 NP_001137296.1 Accepted alive Link to Nucleotide Sequence:NM_001143824.2Link to Protein Sequence:NP_001137296.1Re-query CCDS DB by Nucleotide ID:NM_001143824Re-query CCDS DB by Protein ID:NP_001137296Link to BLAST:NP_001137296.1
Original member Current member NCBI NM_018018.5 NP_060488.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018018.5Link to Protein Sequence:NP_060488.2Re-query CCDS DB by Nucleotide ID:NM_018018Re-query CCDS DB by Protein ID:NP_060488Link to BLAST:NP_060488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137296.1 547 Q969I6 547 100% 0 0
NP_060488.2 547 Q969I6 547 100% 0 0

Chromosomal Locations for CCDS 8750.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 46766701 46766802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46768310 46768407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46769284 46769428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46775049 46775173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46776904 46777004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46778289 46778368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46778501 46778776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46779611 46779669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46779780 46779862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46779949 46780030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46784542 46784634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46785104 46785177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46787916 46788031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46788528 46788618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46792953 46793071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGATCCCATGGAACTGAGAAATGTCAACATCGAACCAGATGATGAGAGCAGCAGTGGAGAAAGTGCTC
CAGATAGCTACATCGGGATAGGAAATTCAGAAAAGGCAGCAATGAGCAGTCAATTTGCTAATGAAGACAC
TGAAAGTCAGAAATTCCTGACAAATGGATTTTTGGGGAAAAAGAAGCTGGCAGATTATGCTGATGAACAC
CATCCCGGAACCACTTCCTTTGGAATGTCTTCATTTAACCTGAGTAATGCCATCATGGGCAGTGGGATCC
TGGGCTTGTCCTATGCCATGGCCAACACAGGGATCATACTTTTTATAATCATGCTGCTTGCTGTGGCAAT
ATTATCACTGTATTCAGTTCACCTTTTATTAAAAACAGCCAAGGAAGGAGGGTCTTTGATTTATGAAAAA
TTAGGAGAAAAGGCATTTGGATGGCCGGGAAAAATTGGAGCTTTTGTTTCCATTACAATGCAGAACATTG
GAGCAATGTCAAGCTACCTCTTTATCATTAAATATGAACTACCTGAAGTAATCAGAGCATTCATGGGACT
TGAAGAAAATACTGGAGAATGGTACCTCAATGGCAACTACCTCATCATATTTGTGTCTGTTGGAATTATT
CTTCCACTTTCGCTCCTTAAAAATTTAGGTTATCTTGGCTATACCAGTGGATTTTCTCTTACCTGCATGG
TGTTTTTTGTTAGTGTGGTGATTTACAAGAAATTCCAAATACCCTGCCCTCTACCTGTTTTGGATCACAG
TGTTGGAAATCTGTCATTCAACAACACGCTTCCAATGCATGTGGTAATGTTACCCAACAACTCTGAGAGT
TCTGATGTGAACTTCATGATGGATTACACCCACCGCAATCCTGCAGGGCTGGATGAGAACCAGGCCAAGG
GCTCTCTTCATGACAGTGGAGTAGAATATGAAGCTCATAGTGATGACAAGTGTGAACCCAAATACTTTGT
ATTCAACTCCCGGACGGCCTATGCAATTCCTATCCTAGTATTTGCTTTTGTATGCCACCCTGAGGTCCTT
CCCATCTACAGTGAACTTAAAGATCGGTCCCGGAGAAAAATGCAAACGGTGTCAAATATTTCCATCACGG
GGATGCTTGTCATGTACCTGCTTGCCGCCCTCTTTGGTTACCTAACCTTCTATGGAGAAGTTGAAGATGA
ATTACTTCATGCCTACAGCAAAGTGTATACATTAGACATCCCTCTTCTCATGGTTCGCCTGGCAGTCCTT
GTGGCAGTAACACTAACTGTGCCCATTGTCCTCTTCCCAATTCGTACATCAGTGATCACACTGTTATTTC
CCAAACGACCCTTCAGCTGGATACGACATTTCCTGATTGCAGCTGTGCTTATTGCACTTAATAATGTTCT
GGTCATCCTTGTGCCAACTATAAAATACATCTTCGGATTCATAGGGGCTTCTTCTGCCACTATGCTGATT
TTTATTCTTCCAGCAGTTTTTTATCTTAAACTTGTCAAGAAAGAAACTTTTAGGTCACCCCAAAAGGTCG
GGGCTTTAATTTTCCTTGTGGTTGGAATATTCTTCATGATTGGAAGCATGGCACTCATTATAATTGACTG
GATTTATGATCCTCCAAATTCCAAGCATCACTAA

Translation (547 aa):
MDPMELRNVNIEPDDESSSGESAPDSYIGIGNSEKAAMSSQFANEDTESQKFLTNGFLGKKKLADYADEH
HPGTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKEGGSLIYEK
LGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTGEWYLNGNYLIIFVSVGII
LPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLPVLDHSVGNLSFNNTLPMHVVMLPNNSES
SDVNFMMDYTHRNPAGLDENQAKGSLHDSGVEYEAHSDDKCEPKYFVFNSRTAYAIPILVFAFVCHPEVL
PIYSELKDRSRRKMQTVSNISITGMLVMYLLAALFGYLTFYGEVEDELLHAYSKVYTLDIPLLMVRLAVL
VAVTLTVPIVLFPIRTSVITLLFPKRPFSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIGASSATMLI
FILPAVFYLKLVKKETFRSPQKVGALIFLVVGIFFMIGSMALIIIDWIYDPPNSKHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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