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Report for CCDS8244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8244.1 Public Homo sapiens 11 EMSY 24 110 108 CCDS HistoryNCBI Gene:56946Re-query CCDS DB by CCDS ID:8244.1Re-query CCDS DB by GeneID:56946See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8244.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334736.7 ENSP00000334130.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334736.7Link to Ensembl Protein Viewer:ENSP00000334130.3Re-query CCDS DB by Nucleotide ID:ENST00000334736Re-query CCDS DB by Protein ID:ENSP00000334130
Original member Current member EBI ENST00000529032.5 ENSP00000432327.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529032.5Link to Ensembl Protein Viewer:ENSP00000432327.1Re-query CCDS DB by Nucleotide ID:ENST00000529032Re-query CCDS DB by Protein ID:ENSP00000432327
Original member Current member NCBI NM_020193.5 NP_064578.2 Accepted alive Link to Nucleotide Sequence:NM_020193.5Link to Protein Sequence:NP_064578.2Re-query CCDS DB by Nucleotide ID:NM_020193Re-query CCDS DB by Protein ID:NP_064578Link to BLAST:NP_064578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064578.2 1322 Q7Z589-1 1322 100% 0 0

Chromosomal Locations for CCDS 8244.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76446939 76447008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76451858 76451957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76453314 76453388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76458183 76458358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76459936 76460085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76463821 76464080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76472564 76472840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76496215 76496469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76513386 76513535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76516142 76516312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76523155 76523291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76526462 76526635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76528268 76528466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76535895 76536059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76537795 76537950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76539599 76539640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76542216 76542367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76544259 76544822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76545797 76546297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76549952 76550146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3969 nt):
ATGCCTGTTGTGTGGCCAACCCTTCTGGATCTCAGCAGGGATGAATGCAAAAGAATTCTTCGAAAATTGG
AATTGGAGGCATATGCTGGAGTTATCAGTGCACTTCGGGCACAGGGGGATCTCACCAAGGAAAAGAAAGA
TCTTCTTGGAGAACTATCAAAAGTTCTTAGCATCTCAACAGAACGCCACCGTGCTGAAGTTCGGAGAGCA
GTAAACGATGAACGGTTAACAACAATTGCACATAATATGTCTGGACCTAATAGCTCTTCAGAATGGTCCA
TTGAAGGTCGTCGATTGGTACCACTGATGCCCCGGCTCGTTCCCCAAACCGCCTTTACTGTAACAGCTAA
TGCTGTTGCTAATGCAGCTATCCAGCATAATGCATCTCTTCCAGTGCCTGCAGAAACAGGAAGCAAGGAA
GTGGTTTGCTATTCCTACACAAGTACCACGTCAACCCCAACCTCTACCCCTGTTCCAAGTGGCAGCATAG
CAACGGTTAAGTCTCCAAGACCTGCCAGTCCTGCCTCCAATGTAGTTGTCTTGCCAAGTGGAAGTACTGT
TTATGTCAAAAGTGTAAGCTGTTCAGATGAAGATGAAAAACCCAGAAAACGAAGGCGAACAAACTCTTCC
AGCTCCTCTCCTGTTGTTCTAAAGGAAGTTCCAAAGGCCGTTGTTCCAGTCTCAAAGACGATCACTGTGC
CTGTGAGTGGTAGTCCCAAGATGAGCAACATCATGCAGAGCATTGCCAACTCCTTACCACCCCACATGTC
TCCTGTAAAAATAACCTTCACTAAACCATCAACACAGACAACAAACACAACAACACAGAAGGTTATTATA
GTCACCACATCACCAAGCTCAACCTTCGTGCCCAACATTCTCTCCAAATCCCATAACTATGCAGCAGTCA
CTAAGCTTGTACCAACGTCAGTCATTGCTTCTACAACCCAGAAGCCACCAGTTGTTATAACTGCTTCACA
GTCCTCTCTGGTCAGTAATAGCAGCAGTGGCAGCAGCAGTTCTACACCATCACCTATTCCTAATACAGTT
GCAGTAACAGCTGTGGTGTCCTCTACACCATCTGTGGTCATGTCAACAGTAGCACAAGGTGTATCTACAT
CAGCAATCAAAATGGCATCAACCAGACTTCCTTCCCCCAAAAGCTTAGTGAGTGCCCCAACTCAGATTCT
TGCACAGTTCCCTAAACAACATCAACAGTCTCCTAAGCAGCAGTTATATCAAGTGCAACAGCAGACACAG
CAACAAGTGGCCCAGCCTTCTCCAGTATCTCATCAGCAACAGCCTCAGCAGTCTCCTTTGCCACCTGGTA
TTAAACCTACCATCCAAATCAAACAGGAGTCAGGTGTTAAAATCATCACACAACAGGTTCAACCAAGTAA
AATCTTACCCAAACCAGTGACAGCAACTCTACCCACCAGTAGCAATTCCCCTATTATGGTGGTTAGCAGT
AATGGTGCAATTATGACAACTAAACTGGTAACCACTCCTACTGGCACACAAGCAACCTATACCCGGCCAA
CAGTGAGCCCATCCATTGGTCGGATGGCTGCAACCCCTGGAGCTGCAACCTATGTGAAAACTACGAGTGG
TAGCATCATTACAGTAGTACCCAAATCATTAGCTACCTTGGGGGGCAAGATAATTAGCAGTAATATAGTT
TCTGGAACGACTACCAAAATCACTACAATCCCAATGACTTCCAAGCCCAACGTGATTGTTGTACAAAAGA
CTACAGGAAAAGGAACGACCATTCAAGGCCTCCCGGGCAAAAATGTTGTCACAACGTTGCTAAATGCTGG
AGGAGAAAAGACTATTCAGACAGTGCCAACAGGAGCAAAGCCAGCTATCCTTACTGCTACAAGACCCATC
ACCAAAATGATTGTAACGCAGCCAAAAGGAATAGGTTCTACAGTTCAACCAGCAGCTAAAATCATCCCAA
CAAAAATTGTTTATGGGCAGCAAGGGAAAACGCAGGTTCTTATTAAACCCAAACCAGTGACTTTTCAAGC
GACAGTTGTTAGTGAACAAACAAGACAGCTAGTAACAGAAACATTACAGCAAGCATCCAGGGTAGCAGAG
GCTGGTAATTCATCTATTCAGGAAGGAAAAGAAGAACCACAGAATTATACAGATAGTAGTTCCTCTTCTA
CAGAGTCCTCCCAGAGTTCCCAAGATTCCCAGCCTGTAGTTCATGTAATTGCTTCCCGGCGTCAGGATTG
GTCAGAACATGAGATTGCAATGGAGACTAGCCCTACCATAATTTATCAGGATGTATCCAGTGAATCACAA
TCAGCTACTTCAACAATCAAAGCTCTGTTAGAACTCCAACAGACAACAGTAAAGGAAAAATTGGAATCTA
AACCAAGACAACCCACTATTGACCTGAGTCAAATGGCAGTGCCTATTCAGATGACCCAGGAAAAGAGACA
TTCTCCTGAGAGTCCATCAATTGCTGTGGTAGAGTCAGAACTAGTAGCTGAATACATCACTACTGAACGC
ACTGATGAGGGGACAGAGGTTGCTTTTCCCCTTCTAGTCAGCCATCGCTCCCAGCCCCAACAGCCTTCCC
AGCCCCAGCGGACCCTGCTCCAGCATGTGGCTCAGTCACAGACCGCAACACAGACTTCGGTGGTGGTGAA
GTCCATCCCAGCATCTTCCCCTGGAGCAATCACCCACATTATGCAGCAGGCATTAAGCAGTCACACTGCT
TTTACCAAACACAGCGAGGAACTTGGAACTGAGGAGGGCGAGGTTGAAGAGATGGACACTTTAGACCCTC
AGACAGGTCTGTTTTACCGATCTGCCCTGACTCAGTCACAGTCAGCTAAACAGCAGAAACTTAGCCAGCC
CCCGCTGGAACAGACTCAGCTGCAAGTGAAAACTCTGCAGTGCTTCCAGACTAAACAGAAGCAGACCATC
CACCTGCAGGCAGACCAGCTCCAGCACAAACTCCCGCAAATGCCCCAGCTTTCCATCAGGCATCAAAAAC
TCACCCCTCTCCAGCAAGAACAAGCACAGCCCAAGCCAGATGTACAGCACACACAGCATCCCATGGTGGC
CAAAGACAGGCAGCTTCCTACCTTAATGGCACAGCCCCCGCAAACTGTAGTACAGGTGCTTGCAGTGAAA
ACCACGCAGCAGCTCCCTAAACTGCAGCAGGCTCCGAACCAACCAAAAATCTACGTGCAACCCCAAACCC
CCCAGAGCCAAATGTCGCTCCCAGCTTCTTCAGAGAAACAGACGGCAAGCCAGGTGGAGCAGCCAATTAT
AACCCAAGGATCCTCTGTTACAAAGATAACTTTTGAGGGGCGCCAGCCTCCCACAGTTACAAAGATAACT
GGTGGCAGTTCTGTGCCTAAGCTGACATCACCAGTTACAAGCATATCTCCCATTCAGGCCTCTGAGAAGA
CAGCAGTGTCTGACATTTTGAAAATGTCTTTGATGGAAGCTCAGATTGATACAAATGTAGAACATATGAT
AGTGGATCCCCCAAAGAAGGCTCTTGCCACTAGCATGCTCACTGGTGAAGCAGGATCATTACCCTCCACC
CACATGGTGGTGGCAGGGATGGCGAATTCCACTCCCCAGCAACAGAAATGTAGAGAGTCCTGTTCGAGTC
CATCCACTGTTGGCTCTTCCCTAACGACAAGGAAAATTGATCCACCAGCAGTGCCTGCGACAGGCCAGTT
CATGCGTATTCAGAATGTAGGCCAAAAGAAAGCTGAAGAGAGTCCAGCAGAAATTATCATCCAGGCTATT
CCTCAGTATGCTATTCCTTGTCACTCCAGCTCCAATGTGGTGGTGGAGCCCAGTGGGCTTCTTGAGCTAA
ACAACTTCACTAGTCAACAGCTGGATGATGAGGAGACAGCAATGGAGCAGGACATAGACAGTAGCACGGA
GGATGGAACTGAACCCAGCCCTTCTCAGAGCTCTGCTGAACGGTCCTAG

Translation (1322 aa):
MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRA
VNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKE
VVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSS
SSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVII
VTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSNSSSGSSSSTPSPIPNTV
AVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVSAPTQILAQFPKQHQQSPKQQLYQVQQQTQ
QQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSS
NGAIMTTKLVTTPTGTQATYTRPTVSPSIGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIV
SGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAILTATRPI
TKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAE
AGNSSIQEGKEEPQNYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQ
SATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTER
TDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTA
FTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPPLEQTQLQVKTLQCFQTKQKQTI
HLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPMVAKDRQLPTLMAQPPQTVVQVLAVK
TTQQLPKLQQAPNQPKIYVQPQTPQSQMSLPASSEKQTASQVEQPIITQGSSVTKITFEGRQPPTVTKIT
GGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMIVDPPKKALATSMLTGEAGSLPST
HMVVAGMANSTPQQQKCRESCSSPSTVGSSLTTRKIDPPAVPATGQFMRIQNVGQKKAEESPAEIIIQAI
PQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDEETAMEQDIDSSTEDGTEPSPSQSSAERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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