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Report for CCDS82395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82395.1 Public Homo sapiens 19 TARM1 24 110 108 CCDS HistoryNCBI Gene:441864Re-query CCDS DB by CCDS ID:82395.1Re-query CCDS DB by GeneID:441864See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616041.4 ENSP00000484383.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616041.4Link to Ensembl Protein Viewer:ENSP00000484383.1Re-query CCDS DB by Nucleotide ID:ENST00000616041Re-query CCDS DB by Protein ID:ENSP00000484383
Original member Current member NCBI NM_001330650.1 NP_001317579.1 Accepted alive Link to Nucleotide Sequence:NM_001330650.1Link to Protein Sequence:NP_001317579.1Re-query CCDS DB by Nucleotide ID:NM_001330650Re-query CCDS DB by Protein ID:NP_001317579Link to BLAST:NP_001317579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317579.1 279 B6A8C7-2 279 100% 0 0

Chromosomal Locations for CCDS 82395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54070003 54070160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54073920 54074216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54074824 54075114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54075883 54075918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54076218 54076275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGAAAGAAAGAAAAAAGAAAGAAAGAAAGGAAAGAAAAAGAAAGAAAGAAAGAAATGGACTGTGCGTGG
GC
CAAGGAGACACAAGGGGAGATGGGTCACTGCCCAAGCCGTCCCTCAGTGCCTGGCCCAGCTCGGTGGT
C
CCTGCCAACAGCAATGTGACGCTGCGATGTTGGACTCCTGCCAGAGGTGTGAGCTTTGTTCTCAGGAAG
GGA
GGAATTATTCTGGAGTCCCCGAAGCCCCTTGATTCTACAGAGGGCGCGGCCGAATTTCACCTCAATA
AT
CTAAAAGTCAGAAATGCTGGAGAGTACACCTGTGAATACTACAGAAAAGCATCCCCCCACATCCTTTC
A
CAGCACAGTGACGTCCTTCTACTGTTGGTGACAGGACATTTATCTAAACCTTTCCTCCGAACCTACCAA
AGG
GGTACAGTGACCGCAGGTGGAAGGGTGACTCTGCAGTGCCAGAAGCGAGACCAATTGTTTGTGCCTA
TC
ATGTTCGCTCTACTGAAGGCAGGGACGCCATCACCCATCCAGCTGCAGAGTCCAGCGGGGAAGGAGAT
A
GACTTCTCTCTGGTGGACGTGACAGCCGGCGATGCTGGGAACTACAGCTGCATGTACTACCAGACAAAG
TCT
CCCTTCTGGGCCTCAGAACCCAGTGATCAGCTTGAGATATTGGTGACAGTTCCCCCAGGTACCACAT
CG
AGCAACTACTCCCTGGGTAACTTCGTACGACTGGGTCTGGCTGCCGTAATTGTGGTTATCATGGGAGC
T
TTCCTGGTGGAGGCCTGGTACAGCCGGAATGTGTCTCCAGGTGAATCAGAGGCCTTCAAACCAGAGTGA


Translation (279 aa):
MKERKKKERKERKRKKERNGLCVGQGDTRGDGSLPKPSLSAWPSSVVPANSNVTLRCWTPARGVSFVLRK
G
GIILESPKPLDSTEGAAEFHLNNLKVRNAGEYTCEYYRKASPHILSQHSDVLLLLVT
GHLSKPFLRTYQ
R
GTVTAGGRVTLQCQKRDQLFVPIMFALLKAGTPSPIQLQSPAGKEIDFSLVDVTAGDAGNYSCMYYQTK
S
PFWASEPSDQLEILVT
VPPGTTSSNYSLGNFVRLGLAAVIVVIMGAFLVEAWYSRNVSPGESEAFKPE



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser