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Report for CCDS82175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82175.1 Public Homo sapiens 17 SKA2 24 110 108 CCDS HistoryNCBI Gene:348235Re-query CCDS DB by CCDS ID:82175.1Re-query CCDS DB by GeneID:348235See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000583380.5 ENSP00000462574.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583380.5Link to Ensembl Protein Viewer:ENSP00000462574.1Re-query CCDS DB by Nucleotide ID:ENST00000583380Re-query CCDS DB by Protein ID:ENSP00000462574
Original member Current member NCBI NM_001330399.2 NP_001317328.1 Accepted alive Link to Nucleotide Sequence:NM_001330399.2Link to Protein Sequence:NP_001317328.1Re-query CCDS DB by Nucleotide ID:NM_001330399Re-query CCDS DB by Protein ID:NP_001317328Link to BLAST:NP_001317328.1

Chromosomal Locations for CCDS 82175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59112333 59112345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59119299 59119495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59131281 59131367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59155131 59155163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGAGGCGGAGGTCGATAAGCTGGAACTGATGTTCCAGAAAGCTGAGTCTGATCTGGATTACATTCAAT
ACAGGCTGGAATATGAAATCAAGACTAATCATCCTGATTCAGCAAGTGAGAAAAATCCAGTTACACTCTT
AAAGGAATTGTCAGTGATAAAGTCTCGATATCAAACTTTGTATGCCCGCTTTAAACCAGTTGCTGTTGAG
CAGAAAGAGAGTAAGAGCCGCATTTGTGCTACTGTGAAAAAGACTATGAATATGATACAAAAACTACAGA
AGCAAACAGACCTGGAGGTAATGCTTTCAGTTGACAGCTGTCACCACTGA

Translation (109 aa):
MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVE
QKESKSRICATVKKTMNMIQKLQKQTDLEVMLSVDSCHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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