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Report for CCDS81837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81837.1 Public Homo sapiens 14 PSMC1 22 109 92 CCDS HistoryNCBI Gene:5700Re-query CCDS DB by CCDS ID:81837.1Re-query CCDS DB by GeneID:5700See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543772.2 ENSP00000445147.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543772.2Link to Ensembl Protein Viewer:ENSP00000445147.2Re-query CCDS DB by Nucleotide ID:ENST00000543772Re-query CCDS DB by Protein ID:ENSP00000445147
Original member NCBI NM_001330212.1 NP_001317141.1 Updated not alive Link to Nucleotide Sequence:NM_001330212.1Link to Protein Sequence:NP_001317141.1Re-query CCDS DB by Nucleotide ID:NM_001330212Re-query CCDS DB by Protein ID:NP_001317141
Current member NCBI NM_001330212.2 NP_001317141.1 Accepted alive Link to Nucleotide Sequence:NM_001330212.2Link to Protein Sequence:NP_001317141.1Re-query CCDS DB by Nucleotide ID:NM_001330212Re-query CCDS DB by Protein ID:NP_001317141Link to BLAST:NP_001317141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317141.1 367 P62191-2 367 100% 0 0

Chromosomal Locations for CCDS 81837.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 90263383 90263442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90263662 90263847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90264041 90264169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90265070 90265166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90268224 90268413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90269397 90269548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90270198 90270352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90272273 90272407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGAGGAAGAATTCATTAGAAATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGAT
CA
AAAGTGGATGATCTGAGGGGGACCCCGATGTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCA
T
GCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCAGCATTCTTTCATTTGTAGACAAGGATCTG
CTG
GAACCTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTGATAGGGGTGCTGATGGATGACA
CG
GATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCAGATATTGGGGGGTT
G
GACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAG
ATG
GGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCA
AA
GCAGTAGCAAACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCT
A
GGTGATGGGCCCAAACTCGTACGGGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTT
ATT
GATGAAATTGACGCCATTGGGACAAAAAGATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGC
GA
ACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGATTCTAGGGGAGATGTGAAAGTTATCATGGC
C
ACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCATTGACAGGAAGATTGAGTTC
CCC
CTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGCTGGCTGATG
AT
GTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTAC
A
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAA
GAA
AATGTTCTTTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA


Translation (367 aa):
MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL
L
EPGCSVLLNHK
VHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEE
M
GIKPPKGVILYGPPGT
GKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF
I
DEIDAIGTK
RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF
P
LPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIK
AICTEAGLMALRERRMKVTNEDFKKSK
E
NVLYKKQEGTPEGLYL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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