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Report for CCDS80497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80497.1 Public Mus musculus 6 Garin1b 23 108 98 CCDS HistoryNCBI Gene:330277Re-query CCDS DB by CCDS ID:80497.1Re-query CCDS DB by GeneID:330277See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164560.7 ENSMUSP00000126496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164560.7Link to Ensembl Protein Viewer:ENSMUSP00000126496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164560Re-query CCDS DB by Protein ID:ENSMUSP00000126496
Original member Current member NCBI NM_001289663.1 NP_001276592.1 Accepted alive Link to Nucleotide Sequence:NM_001289663.1Link to Protein Sequence:NP_001276592.1Re-query CCDS DB by Nucleotide ID:NM_001289663Re-query CCDS DB by Protein ID:NP_001276592Link to BLAST:NP_001276592.1

Chromosomal Locations for CCDS 80497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29319199 29319447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29320628 29320812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29323712 29323964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29326573 29326694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29330643 29330686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29333998 29334165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29335507 29335520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGATGACATCAGTTCCACCTAGAAAGTCTTGGTGGACATCGAAGAAGACAGTAAAAGTGATAAGATCAT
ATCCAACCTTCCCTTCCTTGAATGCCTGGGAGAAGTTCAGGGGCCTCTTGCCTGTGGATGGGGAAACGAA
CCCTGGAGTGGGCCTGGGAGTGGAGGAAGGACTACTCTGCCAGATGGTTCATTCTCCAGAATTCAATCTG
TTTCCTAACTCCGTGGTGTTCGAAAGCAACTTTGTTCAGGTCAGAAGGAGCAGAAACTGGAAAGAAATCT
ATAAGGCTTCCAACACAATGGCCCTTGGGGTGACCTCCTCCGTACCTTGCCTTCCCCTTCCGAACATCCT
CCTTATGGCCAGAGTCAAATGGCATCAGGGGCAGAGCCAGACATGGAACAGACCATCCAGAGCGCCAAGC
ATCAACCTGAAGAGCATTCTCCCTTTGAAGTTTGTGGAGCTCCAGATCTGGGACGACCAGGAACGCGTCC
TGCGGTTGAGGACAGTCACCGAGAAAATCTACTATCTGAAGCTCCATCCCGACCACCCTGAGACTGTCTT
CCACTTTTGGATCCGCCTGGTTCAAATTCTGCATAAGGGTCTGTCCATCACCACCAAGGACCCTACCATC
CTTGTCACTCACTGCCTGGTACCCAAGAGCCTTTGCAGCCCAGGTGGAAAGACTGAGTTAGTGCAGAAGA
AATCGAAAGGCCTCCAGCCCAGTGAGAGCCTCACACATCTGATGGCCCAGGGGGAGAGCGAGACCCTCTC
CCAGATCTTTTCCGACTTGCATCAGCAGAAACAGTACAGTTCCAGCAGGAGCGAAAAGATGCACATCAAC
AAGACCAGCTCAGAGAAAGCTACTCCCTGTGAAGACAGCATCCCCTGTACCTGTGATCTCAACTGGAGGG
ATGCATTCATGTTCGGAGAATGGGAAAGAGAAAACCCTTCTGGACCACAGCCCCTCTCACTCCTCGGTAC
TCTGGCTGCCTCCAGCAGGCCACGGCTGTCCCTAACTGGAGGAAACTCTATATGA

Translation (344 aa):
MMTSVPPRKSWWTSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGETNPGVGLGVEEGLLCQMVHSPEFNL
FPNSVVFESNFVQVRRSRNWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSRAPS
INLKSILPLKFVELQIWDDQERVLRLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILHKGLSITTKDPTI
LVTHCLVPKSLCSPGGKTELVQKKSKGLQPSESLTHLMAQGESETLSQIFSDLHQQKQYSSSRSEKMHIN
KTSSEKATPCEDSIPCTCDLNWRDAFMFGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGNSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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