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Report for CCDS79978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79978.1 Public Mus musculus 3 Pi4kb 23 108 98 CCDS HistoryNCBI Gene:107650Re-query CCDS DB by CCDS ID:79978.1Re-query CCDS DB by GeneID:107650See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107251.8 ENSMUSP00000102872.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107251.8Link to Ensembl Protein Viewer:ENSMUSP00000102872.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107251Re-query CCDS DB by Protein ID:ENSMUSP00000102872
Original member Current member NCBI NM_001293715.1 NP_001280644.1 Accepted alive Link to Nucleotide Sequence:NM_001293715.1Link to Protein Sequence:NP_001280644.1Re-query CCDS DB by Nucleotide ID:NM_001293715Re-query CCDS DB by Protein ID:NP_001280644Link to BLAST:NP_001280644.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280644.1 816 Q8BKC8-1 816 100% 0 0

Chromosomal Locations for CCDS 79978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94984011 94984919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94989303 94989347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94992966 94993193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94994161 94994388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94995835 94995944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94996580 94996684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94996852 94996975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94998848 94999113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95004240 95004372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95004634 95004754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95005759 95005940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2451 nt):
ATGGGAGACATGGTAGTGGAGCCTGCCACCCTGAAGCCAACTTCTGAGCCTACTCCTAGCCCATCAGGGA
ATAATGGGGGCTCCCTACTAAGCGTCATCACGGAGGGGGTCGGGGAACTGTCAGTGATTGACCCTGAGGT
GGCCCAGAAGGCCTGCCAGGAGGTACTGGAGAAAGTCAAGCTTTTGCATGGAGGTGTAGCCATCTCTAGC
AAAGGCACCCCGCTGGAGTTGGTTAATGGGGATGGTGTGGACAATGAAATCCGTTGCCTAGATGATCCAC
CTGCCCAGATCAGGGAGGAAGAAGATGAGATGGGGGCTGGTGTGGCCTCTGGCACAGCCAAAGGAGCAAG
ACGACGACGACAGAACAACTCAGCCAAACAGTCTTGGCTCCTGAGGCTGTTTGAGTCAAAACTATTTGAC
ATCTCTATGGCTATTTCATACTTGTATAACTCCAAGGAGCCTGGAGTGCAAGCCTACATTGGCAACCGGC
TCTTCTACTTTCGCAATGAGGATGTGGACTTCTATTTGCCCCAGTTGCTTAACATGTATATCCACATGGA
TGAGGATGTGGGCGATGCCATTAAGCCCTACATAGTCCACCGCTGTCGCCAGAGCATCAACTTTTCCCTC
CAGTGTGCCCTGTTGCTTGGGGCCTACTCTTCAGACATGCACATTTCCACTCAGCGACACTCGCGAGGGA
CCAAGTTACGGAAGCTAATCCTCTCAGATGAGCTGAAGCCAGCTCACCGAAAGAGGGAGCTGCCGACATT
AAGCCCAGCCCCTGACACAGGGCTGTCTCCCTCTAAAAGGACTCACCAGCGTTCTAAGTCAGATGCTACG
GCCAGCATAAGTCTCAGCAGCAACCTGAAACGAACAGCCAGCAACCCTAAAGTGGAGAATGAGGATGAGG
AGCTCTCCTCCAGCACCGAGAGTATTGATAATTCATTCAGTTCCCCTGTCCGGCTGGCCCCTGAGCGAGA
ATTCATCAAGTCTTTGATGGCAATCGGCAAACGGCTGGCCACGCTCCCCACTAAAGAGCAAAAAACACAA
AGGCTGATCTCAGAGCTTTCCCTGCTCAACCATAAGCTCCCTGCCCGAGTCTGGCTGCCCACGGCTGGCT
TTGACCACCACGTGGTCCGTGTGCCCCACACACAAGCTGTTGTTCTCAATTCCAAGGATAAGGCTCCCTA
CCTGATCTACGTGGAAGTTCTCGAATGTGAAAACTTTGACACAACTAGTGTTCCTGCCCGGATTCCTGAA
AACCGAATTCGGAGTACACGGTCTGTAGAGAACCTGCCTGAATGTGGTATCACTCATGAGCAGCGAGCTG
GCAGCTTCAGCACTGTGCCCAATTATGACAATGATGATGAAGCCTGGTCAGTGGATGATATAGGCGAGCT
GCAAGTGGAGCTCCCTGAAGTGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCGGTGGACAGCATC
ACCAGCCAGGAGAGCAAGGAGCCTGTGTTCATTGCAGCAGGGGACATCCGACGGCGCCTTTCAGAACAGC
TGGCTCATACTCCTACAGCCTTCAAACGAGACCCTGAAGACCCTTCTGCAGTTGCCCTCAAAGAGCCCTG
GCAGGAGAAAGTGCGGAGGATCAGAGAAGGTTCCCCGTATGGCCATCTTCCCAATTGGCGACTCCTTTCA
GTCATTGTCAAGTGTGGAGATGACCTTCGCCAGGAGCTGCTGGCTTTCCAGGTGTTGAAACAACTGCAGT
CCATTTGGGAACAGGAGCGAGTGCCTCTTTGGATCAAGCCATATAAGATTCTTGTGATTTCAGCTGACAG
TGGCATGATTGAACCAGTAGTCAACGCTGTGTCCATCCACCAGGTGAAGAAACAGTCACAGCTCTCCTTG
CTCGATTACTTCCTACAGGAACATGGCAGTTATACCACTGAGGCATTCCTCAGTGCCCAGCGCAATTTTG
TGCAAAGCTGTGCTGGCTACTGCTTGGTCTGCTACCTATTGCAAGTCAAGGACAGGCACAACGGGAACAT
CCTTCTGGACGCAGAAGGTCACATCATCCACATCGACTTTGGCTTCATCCTTTCCAGCTCACCCCGAAAC
CTGGGCTTCGAGACATCAGCCTTTAAGCTGACCACAGAATTTGTGGATGTAATGGGTGGCCTGAACGGTG
ATATGTTCAACTACTACAAGATGCTCATGCTGCAAGGGCTGATTGCTGCTCGGAAGCACATGGACAAGGT
GGTACAGATTGTGGAGATCATGCAGCAAGGTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGC
AACCTCAAAGAGAGGTTCCACATGAGCATGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGG
ACGGCAGCATGAGGTCCATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAATGGCATCATGTG
A

Translation (816 aa):
MGDMVVEPATLKPTSEPTPSPSGNNGGSLLSVITEGVGELSVIDPEVAQKACQEVLEKVKLLHGGVAISS
KGTPLELVNGDGVDNEIRCLDDPPAQIREEEDEMGAGVASGTAKGARRRRQNNSAKQSWLLRLFESKLFD
ISMAISYLYNSKEPGVQAYIGNRLFYFRNEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSL
QCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHRKRELPTLSPAPDTGLSPSKRTHQRSKSDAT
ASISLSSNLKRTASNPKVENEDEELSSSTESIDNSFSSPVRLAPEREFIKSLMAIGKRLATLPTKEQKTQ
RLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFDTTSVPARIPE
NRIRSTRSVENLPECGITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQVELPEVHTNSCDNISQFSVDSI
TSQESKEPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPNWRLLS
VIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSL
LDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRN
LGFETSAFKLTTEFVDVMGGLNGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIR
NLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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