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Report for CCDS79624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79624.1 Public Mus musculus 18 Pcdhgb1 23 108 98 CCDS HistoryNCBI Gene:93699Re-query CCDS DB by CCDS ID:79624.1Re-query CCDS DB by GeneID:93699See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192931.1 ENSMUSP00000141348.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192931.1Link to Ensembl Protein Viewer:ENSMUSP00000141348.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192931Re-query CCDS DB by Protein ID:ENSMUSP00000141348
Original member Current member NCBI NM_033574.4 NP_291052.3 Accepted alive Link to Nucleotide Sequence:NM_033574.4Link to Protein Sequence:NP_291052.3Re-query CCDS DB by Nucleotide ID:NM_033574Re-query CCDS DB by Protein ID:NP_291052Link to BLAST:NP_291052.3

Chromosomal Locations for CCDS 79624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37680458 37682839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGGAAAATCAGGTATTGCTTCACTTCCTGGTGCCTTTGTTCTGCGGCGCCCTCTCCCAGCCCATCCACT
ACTCCATTCCGGAGGAGCTAGCCAAGGGCTCTCTAGTGGGGAGTCTCGCCAAGGATCTGGGACTCAGTAT
CCAAGAATTGCCAGCTCGAAAACTGAGAGTTAGTGCAGAGGATTATTTCAGCGTTAGTGCAGAGAGTGGG
GATTTGTTAGTGAGCGGCAGGATAGACAGAGAAAAGATTTGTGGGAGGAAATCTGAGTGTGCACTGGAAT
TTGAATCTGTTACTGAAAACCCGATGAACATTTTCCACGTAACGGTTGCCATCCAAGACATTAACGATAA
TGCACCACATTTCTTTGGGAAAAGCATTGAATTGGAGATCTGTGAGTCAGCCTTAGCAGGGGCAAAATTC
CCTCTGGACTCTGCGCGAGATGCAGATGTGGGAAGCAACTCCCTGAAGATGTACACTGTCAGCCCCAATC
CACACTTCTCCTTGTCAACGAAGGAAAGTCCTGATGGAAGTAAATACCCAGAACTGCTGCTGGAAACCCC
TCTGGACAGGGAGCATCAGAGCTCCCATCACTTAATACTGACCGCCATGGATGGTGGAGACCCGCCCCTA
AGCAGCACCACCCAGGTCTGGATCAAAGTCACCGACGCCAATGACAATGCTCCAGTGTTCAGCCAGGACA
CTTACAAAGTTAGCCTTCGTGAAAACATACCCCCAGGAACGTTAGTGCTGCAAGTGACAGCTTCTGATCA
GGATGAGAGTATTCACGGAGAGATCACCTATGCCTTCCTTAATGCCCCAGCAAGTACTAACCTTGTCTTC
AATCTCAATCCAAATACTGGAGCTATCACAACTAATGGTACATTGGATTTTGAAGAAAAGAATAGATACA
CATTGGGTGTAGAAGCCAAGGACGGAGGGGTGCACACGGCTCACTGTAATGTTCAGATCGAAATTCTTGA
TGACAACGACAATGCCCCAGAGGTGACATTCATGTCCTTTTCTAACCAAGTTCCAGAGGATTCAGTCCTT
GGAACAGTAATCGCCCTCATTAAAGTTCGAGACAAAGATTCTGGACAAAATGGTTTGGTGGCATGCCATA
TTCAGGAAGAACTTCCCTTCAAATTACAACCCACCTCCAAGAATTATTACAAGTTAGTGATTGACAAGGC
CCTAAACCGAGAACAGACCCCAGAGTACAACGTCACTATCACAGCTACTGACAGTGGCAAGCCCTCGCTT
TCCTCCAAGACATGTGTTACTGTACACATCACAGATATCAACGACAATGCACCGGTTTTTCACCAGGCCT
CCTACTTGGTCCACGTGGCTGAGAACAACCCACCTGGAGCCTCTATTGCTCAAGTCAGCGCCTCAGATCC
GGATTTGGGATCCAATGGCCTCATTTCCTACTCCATCATAGCCAGCGACCTAGAGCCAAGGGCACTATCG
TCCTTCGTGTCCGTGAACCAGGACAGTGGAGTGGTGTTCGCGCAGCGCGCCTTCGACCACGAGCAGCTGC
GTTCCTTCCAGCTGACACTGCAGGCGCGGGACCACGGATCGCCCACACTCAGTGCCAATGTGAGCATGCG
CGTGTTGGTGGGTGACCGCAACGACAACGCACCACGCGTGCTGTATCCCACACTTGAGCCCGACGGCTCT
GCGCTCTTCGACATGGTGCCGCGCGCTGCCGAGCCCGGATACCTGGTCACCAAGGTGGTGGCTGTGGACG
CAGACTCCGGACACAATGCCTGGCTGTCTTACCACGTGCTGCAGGCCAGCGATCCCGGGCTCTTCAGCCT
GGGACTGCGCACAGGCGAGGTGCGCACAGCGCGTGCCCTGGGAGACAGGGACTCAGCGCGGCAGCGCCTT
CTGGTCGCTGTGCGTGATGGTGGACAGCCACCGCTCTCCGCTACAGCCACGCTGCACCTCATCTTCGCTG
ACAGCCTGCAGGAGGTCCTGCCAGACCTCAGCGATGACCCTCTACCATCTGACCCTCAGAGTGAGCTTCA
GTTTTACCTGGTGGTGGCCTTGGCCCTGATCTCAGTGCTCTTCCTCCTGGCGGTGATTCTGGCTATTGCC
CTGCGTCTGAGACACTCCTCCAGATCAGCTGCCTGGGGCTGCTTTCAGCCTGGCCTCAGCCTGAAGTCTC
AACCTGTGGTTCCTCCCAACTACAATGAGGGGACATTACCCTATTCCTATAATCTCTGCGTTGCTTCACA
TTCTACGACTATGGCAGGGTTTAATTTTCACCACGTGGCACCAGAGGTTGCTCCCCCTCAGGATCTCCTG
TGCGATGATCCTTCTGTGGTTGTATGTGGCAATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTTTCC
AGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAA
TGGTGATGAAACTGGCACCTGGCCCAACAACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCC
TCTGCCAGCGAAGCTGCTGATGGGAGCTCTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTC
GATACGGACCCCAGTTTACCCTGCAGCACGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAA
TGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAG
AAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (918 aa):
MENQVLLHFLVPLFCGALSQPIHYSIPEELAKGSLVGSLAKDLGLSIQELPARKLRVSAEDYFSVSAESG
DLLVSGRIDREKICGRKSECALEFESVTENPMNIFHVTVAIQDINDNAPHFFGKSIELEICESALAGAKF
PLDSARDADVGSNSLKMYTVSPNPHFSLSTKESPDGSKYPELLLETPLDREHQSSHHLILTAMDGGDPPL
SSTTQVWIKVTDANDNAPVFSQDTYKVSLRENIPPGTLVLQVTASDQDESIHGEITYAFLNAPASTNLVF
NLNPNTGAITTNGTLDFEEKNRYTLGVEAKDGGVHTAHCNVQIEILDDNDNAPEVTFMSFSNQVPEDSVL
GTVIALIKVRDKDSGQNGLVACHIQEELPFKLQPTSKNYYKLVIDKALNREQTPEYNVTITATDSGKPSL
SSKTCVTVHITDINDNAPVFHQASYLVHVAENNPPGASIAQVSASDPDLGSNGLISYSIIASDLEPRALS
SFVSVNQDSGVVFAQRAFDHEQLRSFQLTLQARDHGSPTLSANVSMRVLVGDRNDNAPRVLYPTLEPDGS
ALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARALGDRDSARQRL
LVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDDPLPSDPQSELQFYLVVALALISVLFLLAVILAIA
LRLRHSSRSAAWGCFQPGLSLKSQPVVPPNYNEGTLPYSYNLCVASHSTTMAGFNFHHVAPEVAPPQDLL
CDDPSVVVCGNNEDPQVSDDSAFQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILA
SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKK
KSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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