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Report for CCDS78409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78409.1 Public Homo sapiens 9 AUH 24 110 108 CCDS HistoryNCBI Gene:549Re-query CCDS DB by CCDS ID:78409.1Re-query CCDS DB by GeneID:549See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78409.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303617.5 ENSP00000307334.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303617.5Link to Ensembl Protein Viewer:ENSP00000307334.5Re-query CCDS DB by Nucleotide ID:ENST00000303617Re-query CCDS DB by Protein ID:ENSP00000307334
Original member Current member NCBI NM_001306190.2 NP_001293119.1 Accepted alive Link to Nucleotide Sequence:NM_001306190.2Link to Protein Sequence:NP_001293119.1Re-query CCDS DB by Nucleotide ID:NM_001306190Re-query CCDS DB by Protein ID:NP_001293119Link to BLAST:NP_001293119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293119.1 310 Q13825-2 310 100% 0 0

Chromosomal Locations for CCDS 78409.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 91214348 91214425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91216059 91216106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91217277 91217327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91220805 91220992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91296021 91296077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91297984 91298076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91355883 91355970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91356088 91356155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 91361628 91361889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCGGCCGCGGTGGCGGCGGCACCTGGGGCCTTGGGATCCCTGCATGCTGGCGGCGCCCGCCTGGTGG
CCGCTTGCAGTGCGTGGCTCTGCCCGGGGTTGAGGCTGCCCGGCTCGTTGGCAGGCCGGCGAGCGGGCCC
GGCGATCTGGGCCCAGGGCTGGGTACCTGCGGCCGGGGGTCCCGCCCCGAAAAGGGGCTACAGCTCTGAG
ATGAAGACGGAGGACGAGCTGCGGGTGCGGCACCTGGAGGAGGAGAACCGAGGAATTGTGGTGCTTGGAA
TAAACAGAGCTTATGGCAAAAATTCACTCAGTAAAAATCTTATAAAAATGCTATCAAAAGCTGTGGATGC
TTTGAAATCTGATAAGAAAGTACGGACCATAATAATCAGGAGTGAAGTCCCAGGGATATTCTGTGCTGCT
AATCTTCCAGTACCAACAATTGCAGCAATAGATGGACTCGCTTTAGGTGGTGGTCTTGAACTGGCTTTAG
CCTGTGATATACGAGTAGCAGCTTCCTCTGCAAAAATGGGCCTGGTTGAAACAAAATTGGCGATTATTCC
TGGTGGAGGGGGGACACAGCGATTGCCACGCGCCATTGGAATGTCCCTGGCCAAGGAGCTCATATTCTCT
GCGCGAGTCCTCGATGGCAAAGAAGCCAAAGCAGTGGGCTTAATCAGCCACGTTCTGGAACAGAACCAGG
AGGGAGACGCGGCCTACAGGAAGGCCTTGGACCTGGCGAGAGAGTTTTTACCTCAGGGACCTGTTGCAAT
GAGAGTGGCAAAATTAGCAATTAATCAAGGGATGGAGGTCGATTTAGTAACAGGGTTAGCCATAGAAGAA
GCTTGTTATGCTCAGACCATTCCAACAAAAGACAGACTTGAAGGTCTTCTTGCTTTTAAAGAGAAAAGGC
CCCCTCGCTATAAAGGAGAATAA

Translation (310 aa):
MAAAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSE
MKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAA
NLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFS
ARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEE
ACYAQTIPTKDRLEGLLAFKEKRPPRYKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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