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Report for CCDS7840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7840.1 Public Homo sapiens 11 LDHC 24 110 108 CCDS HistoryNCBI Gene:3948Re-query CCDS DB by CCDS ID:7840.1Re-query CCDS DB by GeneID:3948See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280704.8 ENSP00000280704.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000280704.8Link to Ensembl Protein Viewer:ENSP00000280704.3Re-query CCDS DB by Nucleotide ID:ENST00000280704Re-query CCDS DB by Protein ID:ENSP00000280704
Original member Current member EBI ENST00000541669.6 ENSP00000437783.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000541669.6Link to Ensembl Protein Viewer:ENSP00000437783.1Re-query CCDS DB by Nucleotide ID:ENST00000541669Re-query CCDS DB by Protein ID:ENSP00000437783
Original member Current member NCBI NM_002301.5 NP_002292.1 Accepted alive Link to Nucleotide Sequence:NM_002301.5Link to Protein Sequence:NP_002292.1Re-query CCDS DB by Nucleotide ID:NM_002301Re-query CCDS DB by Protein ID:NP_002292Link to BLAST:NP_002292.1
Original member Current member NCBI NM_017448.5 NP_059144.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017448.5Link to Protein Sequence:NP_059144.1Re-query CCDS DB by Nucleotide ID:NM_017448Re-query CCDS DB by Protein ID:NP_059144Link to BLAST:NP_059144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002292.1 332 P07864 332 100% 0 0
NP_059144.1 332 P07864 332 100% 0 0

Chromosomal Locations for CCDS 7840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18412718 18412843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18415184 18415301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18429737 18429910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18434740 18434913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18438528 18438645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18446210 18446333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18450963 18451127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTCAACTGTCAAGGAGCAGCTAATTGAGAAGCTAATTGAGGATGATGAAAACTCCCAGTGTAAAATTA
CTATTGTTGGAACTGGTGCCGTAGGCATGGCTTGTGCTATTAGTATCTTACTGAAGGATTTGGCTGATGA
ACTTGCCCTTGTTGATGTTGCATTGGACAAACTGAAGGGAGAAATGATGGATCTTCAGCATGGCAGTCTT
TTCTTTAGTACTTCAAAGATTACTTCTGGAAAAGATTACAGTGTATCTGCAAACTCCAGAATAGTTATTG
TCACAGCAGGTGCAAGGCAGCAGGAGGGAGAAACTCGCCTTGCCCTGGTCCAACGTAATGTGGCTATAAT
GAAATCAATCATTCCTGCCATAGTCCATTATAGTCCTGATTGTAAAATTCTTGTTGTTTCAAATCCAGTG
GATATTTTGACATATATAGTCTGGAAGATAAGTGGCTTACCTGTAACTCGTGTAATTGGAAGTGGTTGTA
ATCTAGACTCTGCCCGTTTCCGTTACCTAATTGGAGAAAAGTTGGGTGTCCACCCCACAAGCTGCCATGG
TTGGATTATTGGAGAACATGGTGATTCTAGTGTGCCCTTATGGAGTGGGGTGAATGTTGCTGGTGTTGCT
CTGAAGACTCTGGACCCTAAATTAGGAACGGATTCAGATAAGGAACACTGGAAAAATATCCATAAACAAG
TTATTCAAAGTGCCTATGAAATTATCAAGCTGAAGGGGTATACCTCTTGGGCTATTGGACTGTCTGTGAT
GGATTTGGTAGGATCCATTTTGAAAAATCTTAGGAGAGTGCACCCAGTTTCCACCATGGTTAAGGGATTA
TATGGAATAAAAGAAGAACTCTTTCTCAGTATCCCTTGTGTCTTGGGGCGGAATGGTGTCTCAGATGTTG
TGAAAATTAACTTGAATTCTGAGGAGGAGGCCCTTTTCAAGAAGAGTGCAGAAACACTTTGGAATATTCA
AAAGGATCTAATATTTTAA

Translation (332 aa):
MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKGEMMDLQHGSL
FFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVSNPV
DILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVA
LKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGL
YGIKEELFLSIPCVLGRNGVSDVVKINLNSEEEALFKKSAETLWNIQKDLIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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