NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78288.1 Public Homo sapiens 7 IQCA1L 24 110 108 CCDS HistoryNCBI Gene:392843Re-query CCDS DB by CCDS ID:78288.1Re-query CCDS DB by GeneID:392843See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 78288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615129.4 ENSP00000482119.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615129.4Link to Ensembl Protein Viewer:ENSP00000482119.1Re-query CCDS DB by Nucleotide ID:ENST00000615129Re-query CCDS DB by Protein ID:ENSP00000482119
Original member Current member NCBI NM_001304419.2 NP_001291348.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304419.2Link to Protein Sequence:NP_001291348.1Re-query CCDS DB by Nucleotide ID:NM_001304419Re-query CCDS DB by Protein ID:NP_001291348Link to BLAST:NP_001291348.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291348.1 818 A6NCM1 818 100% 0 0

Chromosomal Locations for CCDS 78288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151190980 151191087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151191638 151191876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151192276 151192453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151192743 151192829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151193291 151193490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151194256 151194363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151194516 151194598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151195430 151195485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151195575 151195658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151196448 151196554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151196977 151197052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151197205 151197327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151197822 151197906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151198798 151199003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151200383 151200454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151202911 151203096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151203395 151203514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151204509 151204836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151205444 151205454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGTCTGAGGGAGCTTACCAGCGCCTCTGGGAGTCCTCCCACGCGACCCTGCAGGAGCTGCTGGACCAAG
AG
CAGCTTCTGCTCGAACCTGCGCCCGACCGGGAGCGGCAGTCCTTCCAGTACAGGCTCGCATCGCTCTA
C
CTGCACTACCTGGGGCTGCTGCGCCGCTTCGACACCGTCTATGACCAGATGGTGCAGCCGCAGAAGCGG
CGG
CTGCTGCGACGCCTGCTGGACGGCGTGGCGGGCCGCGTGCTGGAGCTCAAGGACGAGCTGGTGCGCG
CC
GACCTGTGTGAGAACCACTGCCTGGACCGCGTGCTGCAGGATTTCAAGCTCACCCCAGCTGACCTGGA
G
GTTCCAATCCCCAAATACTTCCTGCTGGAGCAGTCCACCACTGTGCGGGAGCGAGGGCTGATACTGGCC
GAG
ATCCTGTCCAGACTGGAGCCAGTGTCCTCCCAGAAGAGCTTTACAGGAATGCACCGGACTGAGGCCA
TA
ATTCTAGTGCAAAAGGCAGAGCGGGCGAGGCAAGGCCGGCTTCGAGCCACCTTCATGCGAGAGATTCG
A
AGAGATGAGGAGCAGGATGGGAGGATTCGGGAGGATGGATGGCACAAGTTCAGTCAGGGCCAAGCAGCT
GTC
ACCATACAGAAGGTGTGGAAAGGCTATCTGCAGAGGAAACGCACTCAGCAGGACCGGCGAATGGAGA
TG
GAGTTCATTGGCATGCTCCCCTCACCCAACCAGGTAGAGCACCTGAGCATCATCTCCCAGCCATGCCT
C
GTGGAGGATGTCCAGAGGCTCCGCCAGATGGAGAAAGAGGAGGAGTTCCGGGCAGCAATGGTGAAGGCC
CAT
GATTCTCTGGTAGAGACAGAGGGGCCTGACATGAAGGAGAAAATGAAGGAGCAAATCCGACAGTGGT
TT
ATCGAGTGCCATGACCTTACTGGCCGGTTCCCTGATTATCCAGATGCGTCTTCAGGTGGATCCTACTC
A
ATCTTTGCAGACAAAACGCCAGAACAGGTGAGAATGGAACTGGAAATGCAGATGCAAGAGAACAGAAAA
AAG
GAACAAGAGAAGAGCAAGGAAAAAGGAAAGGATGAAAAAGAGAAGAAGAAAGGAAAGGAAGAAAAGG
CC
AAGAAGGGGGAAGTGGATGCGGTGTTGCAAGTGTTGCCATCCAAATGTATCCCTATGATCTGTGCCGG
G
CATGAAGAATACTTAAATACATGGAAGAACCGGTGTGAGAGCATACACCCCAGTCAGAATTATGACTCC
GAG
ACCCTCCGGGAGGAGAAGAGGAAAGAGGTGGAGCTGGAGATCCGGATACAGGTGGATGAGCTGATGC
GT
CAGGAGCTGAGGAAGCTCCGTCTGGCTGTGGACAAGGAGGAAGAAAGACCCCTGAGGGCTCCAAAGAA
A
ACACCTGGGAAGAAAACTGGGAAAAAGAAGGAAAAAGATCTGACCTCAGACAGGTCTGTGGAGTCTCTG
TAC
GAAGAGCTTGTTATTTCTGGCCTTCTAAGGAAGAGTGAGTCAGTAGCATTGAAAGACTACATAGGTG
AC
TTCCTGTATCTTGGATCCACTCTGAGTTTGGTGAAGAAGTTGCCCATGCCATCCCTGTTTGACATACG
A
CAGAATGTGGCTTTGTATGCGGTCCTTCGGCTTGGCTCCCCGGATATCCACATCATGGCCCCACTCATC
CGC
TCCATCCTCCTGGTGGGCCCCTCTGGCATGGGGAAGAAGATGCTGGTCAAGGCAGTGTGCACAGAAA
CT
GGCGCCAACCTGTTCGACCTGTCGCCGGAAAACCTGCTGGGCAAATATCCTGGCAGGAATGGGGCACA
G
ATGATGGTGCATATAGTCTTTAAGGTAGCCCGACTCCTACAGCCCTCTGTGATTTGGATTGGAAATGCT
GAG
AAGAATTTCTATAAGAAGACCCCCAAAGAAGACAAGGAGATGGACCCAAAGCGGATAAAGAAGGACC
TC
ACCAAGGCCTTGCGGCTGCTGACTCCCGGAGACCGTGTGATGCTGATTGGGACAACCTCCCGGCCACA
G
CTGGCCGAGATGCGGGGTCTGTGCCGGGTCTACGAGCGGATCCTCTTCATGCCCCGGCCTGACTACGCA
TCC
CGCTATGTGCTCTGGAAGCGTATGATAGAGGCCCGGGGCATCCAGCCGACCCAGCACCTGGACATCA
GT
GCCCTAGCCAAGGTCTCCGATGGCTACACGCCGGGTCACATTCTCCAAGCCATCCAATCGGTGCTGAG
T
GAGCGGCGGTTCCTGCAACTGTCCAAGCGGCCCCTGGTGGCCTCTGAGTTCCTGGGACAACTGGTGAAG
CTG
GATCCAGTGTACAGGGAGGAGGAGGAGTCCCTGAAGGACTGGTACTTCAAGACCCCACTGGGCAAGA
AG
AGCATGAAACACAGGATGGACCAGTTGGAGGCCGAGGAGGCCAAGCTGGACAAGGAGAAGAAGAAAAG
G
AAGTGA


Translation (818 aa):
MSEGAYQRLWESSHATLQELLDQEQLLLEPAPDRERQSFQYRLASLYLHYLGLLRRFDTVYDQMVQPQKR
R
LLRRLLDGVAGRVLELKDELVRADLCENHCLDRVLQDFKLTP
ADLEVPIPKYFLLEQSTTVRERGLILA
E
ILSRLEPVSSQK
SFTGMHRTEAIILVQKAERARQGRLRATFMREIRRDEEQDGRIREDGWHKFSQGQAA
V
TIQK
VWKGYLQRKRTQQDRRMEMEFIGMLPSPNQVEHLSIISQPCLVEDVQRLRQMEKEEEFRAAMVKA
H
DSLVETEGPDMKEKMKEQIRQWFIEC
HDLTGRFPDYPDASSGGSYSIFADKTPEQVRMELEMQMQENRK
K
EQEKSKEKGKDEKEKKKGKEEKAKKG
EVDAVLQVLPSKCIPMICAGHEEYLNTWKNRCESIHPSQNYDS
E
TLREEKRKEVELEIRIQ
VDELMRQELRKLRLAVDKEEERPLRAPKKTPGKKTGKKKEKDLTSDRSVESL
Y
EELVISGLLRKSESVALKDYI
GDFLYLGSTLSLVKKLPMPSLFDIRQNVALYAVLRLGSPDIHIMAPLI
R
SILLVGPSGMGKKMLVKAVCTETGANLFDLSPENLLGKYPGRNGAQMMVHIVFK
VARLLQPSVIWIGNA
E
KNFYKKTPKEDKE
MDPKRIKKDLTKALRLLTPGDRVMLIGTTSRPQLAEMRGLCRVYERILFMPRPDYA
S
RY
VLWKRMIEARGIQPTQHLDISALAKVSDGYTPGHILQAIQSVLSERRFLQLSKRPLVASEFLGQLVK
L
DPVYREEEESLK
DWYFKTPLGKKSMKHRMDQLEAEEAKLDKEKKKRK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser