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Report for CCDS7479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7479.1 Public Homo sapiens 10 GOT1 24 110 108 CCDS HistoryNCBI Gene:2805Re-query CCDS DB by CCDS ID:7479.1Re-query CCDS DB by GeneID:2805See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370508.7 ENSP00000359539.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370508.7Link to Ensembl Protein Viewer:ENSP00000359539.5Re-query CCDS DB by Nucleotide ID:ENST00000370508Re-query CCDS DB by Protein ID:ENSP00000359539
Original member Current member NCBI NM_002079.3 NP_002070.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002079.3Link to Protein Sequence:NP_002070.1Re-query CCDS DB by Nucleotide ID:NM_002079Re-query CCDS DB by Protein ID:NP_002070Link to BLAST:NP_002070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002070.1 413 P17174-1 413 100% 0 0

Chromosomal Locations for CCDS 7479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 99397547 99397686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99402580 99402722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99403469 99403634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99403724 99403874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99405756 99405860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99406137 99406249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99406726 99406849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99420624 99420805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99430448 99430565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGCACCTCCGTCAGTCTTTGCCGAGGTTCCGCAGGCCCAGCCTGTCCTGGTCTTCAAGCTCACTGCCG
ACTTCAGGGAGGATCCGGACCCCCGCAAGGTCAACCTGGGAGTGGGAGCATATCGCACGGATGACTGCCA
TCCCTGGGTTTTGCCAGTAGTGAAGAAAGTGGAGCAGAAGATTGCTAATGACAATAGCCTAAATCACGAG
TATCTGCCAATCCTGGGCCTGGCTGAGTTCCGGAGCTGTGCTTCTCGTCTTGCCCTTGGGGATGACAGCC
CAGCACTCAAGGAGAAGCGGGTAGGAGGTGTGCAATCTTTGGGGGGAACAGGTGCACTTCGAATTGGAGC
TGATTTCTTAGCGCGTTGGTACAATGGAACAAACAACAAGAACACACCTGTCTATGTGTCCTCACCAACC
TGGGAGAATCACAATGCTGTGTTTTCCGCTGCTGGTTTTAAAGACATTCGGTCCTATCGCTACTGGGATG
CAGAGAAGAGAGGATTGGACCTCCAGGGCTTCCTGAATGATCTGGAGAATGCTCCTGAGTTCTCCATTGT
TGTCCTCCACGCCTGTGCACACAACCCAACTGGGATTGACCCAACTCCGGAGCAGTGGAAGCAGATTGCT
TCTGTCATGAAGCACCGGTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTCGCATCTGGAAACC
TGGAGAGAGATGCCTGGGCCATTCGCTATTTTGTGTCTGAAGGCTTCGAGTTCTTCTGTGCCCAGTCCTT
CTCCAAGAACTTCGGGCTCTACAATGAGAGAGTCGGGAATCTGACTGTGGTTGGAAAAGAACCTGAGAGC
ATCCTGCAAGTCCTTTCCCAGATGGAGAAGATCGTGCGGATTACTTGGTCCAATCCCCCCGCCCAGGGAG
CACGAATTGTGGCCAGCACCCTCTCTAACCCTGAGCTCTTTGAGGAATGGACAGGTAATGTGAAGACAAT
GGCTGACCGGATTCTGACCATGAGATCTGAACTCAGGGCACGACTAGAAGCCCTCAAAACCCCTGGGACC
TGGAACCACATCACTGATCAAATTGGCATGTTCAGCTTCACTGGGTTGAACCCCAAGCAGGTTGAGTATC
TGGTCAATGAAAAGCACATCTACCTGCTGCCAAGTGGTCGAATCAACGTGAGTGGCTTAACCACCAAAAA
TCTAGATTACGTGGCCACCTCCATCCATGAAGCAGTCACCAAAATCCAGTGA

Translation (413 aa):
MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHE
YLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPT
WENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIA
SVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPES
ILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGT
WNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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