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Report for CCDS7312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7312.1 Public Homo sapiens 10 CHST3 24 110 108 CCDS HistoryNCBI Gene:9469Re-query CCDS DB by CCDS ID:7312.1Re-query CCDS DB by GeneID:9469See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373115.5 ENSP00000362207.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373115.5Link to Ensembl Protein Viewer:ENSP00000362207.4Re-query CCDS DB by Nucleotide ID:ENST00000373115Re-query CCDS DB by Protein ID:ENSP00000362207
Original member Current member NCBI NM_004273.5 NP_004264.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004273.5Link to Protein Sequence:NP_004264.2Re-query CCDS DB by Nucleotide ID:NM_004273Re-query CCDS DB by Protein ID:NP_004264Link to BLAST:NP_004264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004264.2 479 Q7LGC8 479 100% 0 0

Chromosomal Locations for CCDS 7312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 72005843 72005982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72007172 72008471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGAGAAAGGACTCACTTTGCCCCAGGACTGCCGGGACTTTGTGCACAGCCTGAAGATGAGAAGCAAAT
ACGCCCTTTTCTTGGTTTTTGTGGTGATAGTTTTTGTCTTCATCGAAAAGGAAAATAAAATCATATCAAG
GGTCTCAGACAAGCTGAAGCAGATTCCCCAAGCTCTAGCAGATGCCAACAGCACCGACCCAGCCCTGATC
TTAGCTGAGAACGCATCTCTCTTGTCCCTGAGCGAGCTCGATTCAGCCTTCTCCCAGCTTCAGAGCCGTC
TCCGCAACCTCAGCTTGCAGCTGGGCGTGGAGCCAGCCATGGAGGCCGCAGGGGAGGAAGAGGAAGAGCA
GAGAAAGGAGGAGGAGCCGCCCAGACCGGCCGTGGCGGGGCCCCGGCGCCACGTGCTGCTCATGGCCACC
ACGCGCACCGGCTCCTCGTTCGTGGGCGAGTTCTTCAACCAGCAGGGCAACATCTTCTACCTCTTCGAGC
CGCTGTGGCACATCGAGCGCACAGTGTCCTTCGAGCCGGGGGGCGCCAACGCCGCGGGCTCGGCCCTGGT
GTACCGCGACGTGCTCAAGCAGCTCTTCCTGTGCGACCTGTACGTGCTGGAGCACTTCATCACGCCGCTG
CCCGAGGACCACCTGACTCAGTTCATGTTCCGCCGGGGCTCCAGCCGCTCCCTGTGCGAGGACCCCGTCT
GTACGCCCTTCGTCAAGAAGGTCTTCGAGAAGTACCACTGCAAGAACCGCCGCTGCGGCCCCCTCAACGT
GACGCTGGCCGCAGAGGCCTGCCGCCGCAAGGAGCACATGGCCCTCAAGGCGGTGCGCATCCGGCAGCTG
GAGTTCCTGCAGCCGCTGGCCGAGGACCCCCGCCTGGACCTGCGCGTCATCCAGCTGGTGCGCGACCCCC
GGGCCGTGCTGGCCTCGCGCATGGTGGCCTTCGCCGGCAAGTATAAGACCTGGAAGAAGTGGCTGGACGA
CGAGGGCCAGGACGGCCTGAGGGAAGAGGAGGTGCAGCGGCTGCGGGGCAACTGCGAGAGCATCCGCCTG
TCCGCGGAGCTGGGGCTGCGGCAGCCCGCCTGGCTGCGGGGCCGCTACATGCTGGTGCGCTACGAGGACG
TGGCACGCGGGCCGCTGCAGAAGGCCCGCGAGATGTACCGCTTCGCCGGCATCCCCCTGACCCCGCAGGT
GGAAGACTGGATCCAAAAGAACACGCAGGCGGCCCACGACGGCAGCGGCATCTACTCCACGCAGAAGAAC
TCCTCGGAGCAGTTCGAGAAGTGGCGCTTCAGCATGCCCTTCAAGCTGGCCCAGGTGGTGCAGGCCGCCT
GCGGCCCTGCCATGCGCCTCTTCGGCTACAAACTGGCGCGGGACGCCGCCGCCCTCACCAACCGCTCAGT
CAGCCTGCTGGAGGAGAGGGGCACCTTCTGGGTCACGTAG

Translation (479 aa):
MEKGLTLPQDCRDFVHSLKMRSKYALFLVFVVIVFVFIEKENKIISRVSDKLKQIPQALADANSTDPALI
LAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKEEEPPRPAVAGPRRHVLLMAT
TRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANAAGSALVYRDVLKQLFLCDLYVLEHFITPL
PEDHLTQFMFRRGSSRSLCEDPVCTPFVKKVFEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQL
EFLQPLAEDPRLDLRVIQLVRDPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRL
SAELGLRQPAWLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQKN
SSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERGTFWVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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