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Report for CCDS72798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72798.1 Public Homo sapiens 1 SLC1A7 24 110 108 CCDS HistoryNCBI Gene:6512Re-query CCDS DB by CCDS ID:72798.1Re-query CCDS DB by GeneID:6512See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371491.4 ENSP00000360546.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371491.4Link to Ensembl Protein Viewer:ENSP00000360546.4Re-query CCDS DB by Nucleotide ID:ENST00000371491Re-query CCDS DB by Protein ID:ENSP00000360546
Original member Current member NCBI NM_001287596.2 NP_001274525.1 Accepted alive Link to Nucleotide Sequence:NM_001287596.2Link to Protein Sequence:NP_001274525.1Re-query CCDS DB by Nucleotide ID:NM_001287596Re-query CCDS DB by Protein ID:NP_001274525Link to BLAST:NP_001274525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274525.1 158 O00341-2 158 100% 0 0

Chromosomal Locations for CCDS 72798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53108589 53108634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53114758 53114973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53134350 53134429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53142315 53142449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGTGCCGCATGCCATCTTGGCACGGGGGAGGGACGTGTGCAGGCGGAATGGACTCCTCATCCTGTCTG
TGCTGTCTGTCATCGTGGGCTGCCTCCTCGGCTTCTTCTTGAGGACCCGGCGCCTCTCACCACAGGAAAT
TAGTTACTTCCAGTTCCCTGGAGAGCTCCTGATGAGGATGCTGAAGATGATGATCCTGCCACTGGTGGTC
TCCAGCTTGATGTCCGGACTTGCCTCCCTGGATGCCAAGACCTCTAGCCGCCTGGGCGTCCTCACCGTGG
CGTACTACCTGTGGACCACCTTCATGGCTGTCATCGTGGGCATCTTCATGGTCTCCATCATCCACCCAGG
CAGCGCGGCCCAGAAGGAGACCACGGAGCAGAGTGGGAAGCCCATCATGAGCTCAGCCGATGCCCTGTTG
GACCTCATCCGGCAGAAAGAAGAAAGTTGGAGGAACGGACCAAAGGGTCCTGGCTGA

Translation (158 aa):
MVPHAILARGRDVCRRNGLLILSVLSVIVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMMILPLVV
SSLMSGLASLDAKTSSRLGVLTVAYYLWTTFMAVIVGIFMVSIIHPGSAAQKETTEQSGKPIMSSADALL
DLIRQKEESWRNGPKGPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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