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Report for CCDS7086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7086.1 Public Homo sapiens 10 UPF2 24 110 108 CCDS HistoryNCBI Gene:26019Re-query CCDS DB by CCDS ID:7086.1Re-query CCDS DB by GeneID:26019See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356352.6 ENSP00000348708.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356352.6Link to Ensembl Protein Viewer:ENSP00000348708.2Re-query CCDS DB by Nucleotide ID:ENST00000356352Re-query CCDS DB by Protein ID:ENSP00000348708
Original member Current member EBI ENST00000357604.10 ENSP00000350221.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357604.10Link to Ensembl Protein Viewer:ENSP00000350221.5Re-query CCDS DB by Nucleotide ID:ENST00000357604Re-query CCDS DB by Protein ID:ENSP00000350221
Original member Current member EBI ENST00000397053.6 ENSP00000380244.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397053.6Link to Ensembl Protein Viewer:ENSP00000380244.2Re-query CCDS DB by Nucleotide ID:ENST00000397053Re-query CCDS DB by Protein ID:ENSP00000380244
Original member Current member NCBI NM_015542.4 NP_056357.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015542.4Link to Protein Sequence:NP_056357.1Re-query CCDS DB by Nucleotide ID:NM_015542Re-query CCDS DB by Protein ID:NP_056357Link to BLAST:NP_056357.1
Original member Current member NCBI NM_080599.3 NP_542166.1 Accepted alive Link to Nucleotide Sequence:NM_080599.3Link to Protein Sequence:NP_542166.1Re-query CCDS DB by Nucleotide ID:NM_080599Re-query CCDS DB by Protein ID:NP_542166Link to BLAST:NP_542166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056357.1 1272 Q9HAU5 1272 100% 0 0
NP_542166.1 1272 Q9HAU5 1272 100% 0 0

Chromosomal Locations for CCDS 7086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11921298 11921307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11929865 11929985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11931641 11931782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11936545 11936712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11942665 11942763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11943064 11943168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11948369 11948508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11952066 11952249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11955232 11955507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11956320 11956523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11959171 11959356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11964009 11964125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11967341 11967454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11979057 11979165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11997672 11997757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11999906 12000009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12001676 12001825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12004530 12004727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12014024 12014184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12028745 12029524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12035059 12035423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3819 nt):
ATGCCAGCTGAGCGTAAAAAGCCAGCAAGTATGGAAGAAAAAGACTCTTTACCAAACAACAAGGAAAAAG
ACTGCAGTGAAAGGCGGACAGTGAGCAGCAAGGAGAGGCCAAAAGACGATATCAAGCTCACTGCCAAGAA
GGAGGTCAGCAAGGCCCCTGAAGACAAGAAGAAGAGACTGGAAGATGATAAGAGAAAAAAGGAAGACAAG
GAACGCAAGAAAAAAGACGAAGAAAAGGTGAAGGCAGAGGAAGAATCAAAGAAAAAAGAAGAGGAAGAAA
AAAAGAAACATCAAGAGGAAGAGAGAAAGAAGCAAGAAGAGCAGGCCAAACGTCAGCAAGAAGAAGAAGC
AGCTGCTCAGATGAAAGAAAAAGAAGAATCCATTCAGCTTCATCAGGAAGCTTGGGAACGACATCATTTA
AGAAAGGAACTTCGTAGCAAAAACCAAAATGCTCCGGACAGCCGACCAGAGGAAAACTTCTTCAGCCGCC
TCGACTCAAGTTTGAAGAAAAATACTGCTTTTGTCAAGAAACTAAAAACTATTACAGAACAACAGAGAGA
CTCCTTGTCCCATGATTTTAATGGCCTAAATTTAAGCAAATACATTGCAGAAGCTGTAGCTTCCATCGTG
GAAGCAAAACTAAAAATCTCTGATGTGAACTGTGCTGTGCACCTCTGCTCTCTCTTTCACCAGCGTTATG
CTGACTTTGCCCCATCACTTCTTCAGGTCTGGAAAAAACATTTTGAAGCAAGGAAAGAGGAGAAAACACC
TAACATCACCAAGTTAAGAACTGATTTGCGTTTTATTGCAGAATTGACAATAGTTGGGATTTTCACTGAC
AAGGAAGGTCTTTCCTTAATCTATGAACAGCTAAAAAATATTATTAATGCTGATCGGGAGTCCCACACTC
ATGTCTCTGTAGTGATTAGTTTCTGTCGACATTGTGGAGATGATATTGCTGGACTTGTACCAAGGAAAGT
AAAGAGTGCTGCAGAGAAGTTTAATTTGAGTTTTCCTCCTAGTGAGATAATTAGTCCAGAGAAACAACAG
CCCTTCCAGAATCTTTTAAAAGAGTACTTTACGTCTTTGACCAAACACCTGAAAAGGGACCACAGGGAGC
TCCAGAATACTGAGAGACAAAACAGGCGCATTCTACATTCTAAAGGGGAGCTCAGTGAAGATAGACATAA
ACAGTATGAGGAATTTGCTATGTCTTACCAGAAGCTGCTGGCAAATTCTCAATCCTTAGCAGACCTTTTG
GATGAAAATATGCCAGATCTTCCTCAAGACAAACCAACACCAGAAGAACATGGGCCTGGAATTGATATAT
TCACACCTGGTAAACCTGGAGAATATGACTTGGAAGGTGGTATATGGGAAGATGAAGATGCTCGGAATTT
TTATGAGAACCTCATTGATTTGAAGGCTTTTGTCCCAGCCATCTTGTTTAAAGACAATGAAAAAAGTTGT
CAGAATAAAGAGTCCAACAAAGATGATACCAAAGAGGCAAAAGAATCTAAGGAGAATAAGGAGGTATCAA
GTCCCGATGATTTGGAACTTGAGTTGGAGAATCTAGAAATTAATGATGACACCTTAGAATTAGAGGGTGG
AGATGAAGCTGAAGATCTTACAAAGAAACTTCTTGATGAACAAGAACAAGAAGATGAGGAAGCCAGCACT
GGATCTCATCTCAAGCTCATAGTAGATGCTTTCCTACAGCAGTTACCCAACTGTGTCAACCGAGATCTGA
TAGACAAGGCAGCAATGGATTTTTGCATGAACATGAACACAAAAGCAAACAGGAAGAAGTTGGTACGGGC
ACTCTTCATAGTTCCTAGACAAAGGTTGGATTTGCTACCATTTTATGCAAGATTGGTTGCTACATTGCAT
CCCTGCATGTCTGATGTAGCAGAGGATCTTTGTTCCATGCTGAGGGGGGATTTCAGATTTCATGTACGGA
AAAAGGACCAGATCAATATTGAAACAAAGAATAAAACTGTTCGTTTTATAGGAGAACTAACTAAGTTTAA
GATGTTCACCAAAAATGACACACTGCATTGTTTAAAGATGCTTCTGTCAGACTTCTCTCATCACCATATT
GAAATGGCATGCACCCTGCTGGAGACATGTGGACGGTTTCTTTTCAGATCTCCAGAATCTCACCTGAGGA
CCAGTGTACTTTTGGAGCAAATGATGAGAAAGAAGCAAGCAATGCATCTTGATGCGAGATACGTCACAAT
GGTAGAGAATGCATATTACTACTGCAACCCACCTCCAGCTGAAAAAACCGTGAAAAAGAAACGTCCTCCT
CTCCAGGAATATGTCCGGAAACTTTTGTACAAGGATCTCTCTAAGGTTACCACCGAGAAGGTTTTGAGAC
AGATGCGAAAGCTGCCCTGGCAGGACCAAGAAGTGAAAGACTATGTTATTTGTTGTATGATAAACATCTG
GAATGTGAAATATAATAGTATTCATTGTGTAGCCAACCTCTTAGCAGGACTAGTGCTCTACCAAGAGGAT
GTTGGGATCCACGTTGTGGATGGAGTGTTAGAAGATATTCGATTAGGAATGGAGGTTAATCAACCTAAAT
TTAATCAGAGGCGCATCAGCAGTGCCAAGTTCTTAGGAGAACTTTACAATTACCGAATGGTGGAATCAGC
TGTTATTTTCAGAACTCTGTATTCTTTTACCTCATTTGGTGTTAATCCTGATGGCTCTCCAAGTTCCCTG
GACCCACCTGAGCATCTTTTCAGAATTAGACTCGTATGCACTATTCTGGACACATGTGGCCAGTACTTTG
ACAGAGGTTCCAGTAAACGAAAACTTGATTGTTTCCTTGTATATTTTCAGCGTTATGTTTGGTGGAAGAA
AAGTTTGGAGGTTTGGACAAAAGACCATCCATTTCCTATTGATATAGATTACATGATCAGTGATACACTA
GAACTGCTAAGACCAAAGATCAAACTCTGTAATTCTCTGGAAGAATCCATCAGGCAGGTACAAGACTTGG
AACGAGAATTCTTAATAAAACTAGGCCTAGTAAATGACAAAGACTCAAAAGATTCTATGACAGAAGGAGA
AAATCTTGAAGAGGATGAAGAAGAAGAAGAAGGTGGGGCTGAAACAGAAGAACAATCTGGAAATGAAAGT
GAAGTAAATGAGCCAGAAGAAGAGGAGGGTTCTGATAATGATGATGATGAGGGAGAAGAAGAGGAGGAAG
AGAATACAGATTACCTTACAGATTCCAATAAGGAAAATGAAACCGATGAAGAGAATACTGAGGTAATGAT
TAAAGGCGGTGGACTTAAGCATGTACCTTGTGTAGAAGATGAGGACTTCATTCAAGCTCTGGATAAAATG
ATGCTAGAAAATCTACAGCAACGAAGTGGTGAATCTGTTAAAGTGCACCAACTAGATGTTGCCATTCCTT
TGCATCTCAAAAGCCAGCTGAGGAAAGGGCCCCCACTGGGAGGTGGGGAAGGAGAGGCTGAGTCTGCAGA
CACAATGCCGTTTGTCATGTTAACAAGAAAAGGCAATAAACAGCAGTTTAAGATCCTTAATGTACCCATG
TCCTCTCAACTTGCTGCAAATCACTGGAACCAGCAACAGGCAGAACAAGAAGAGAGGATGAGAATGAAAA
AGCTCACACTAGATATCAATGAACGGCAAGAACAAGAAGATTATCAAGAAATGTTGCAGTCTCTTGCACA
GCGCCCAGCTCCAGCAAACACCAATCGTGAGAGGCGGCCTCGCTACCAACATCCGAAGGGAGCACCTAAT
GCAGATCTAATCTTTAAGACTGGTGGGAGGAGACGTTGA

Translation (1272 aa):
MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDK
ERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQMKEKEESIQLHQEAWERHHL
RKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIV
EAKLKISDVNCAVHLCSLFHQRYADFAPSLLQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTD
KEGLSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQ
PFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLL
DENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSC
QNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEAEDLTKKLLDEQEQEDEEAST
GSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLPFYARLVATLH
PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPP
LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSL
DPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTL
ELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGNES
EVNEPEEEEGSDNDDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPM
SSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
ADLIFKTGGRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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