NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6854.1 Public Homo sapiens 9 NEK6 24 110 108 CCDS HistoryNCBI Gene:10783Re-query CCDS DB by CCDS ID:6854.1Re-query CCDS DB by GeneID:10783See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320246.10 ENSP00000319734.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320246.10Link to Ensembl Protein Viewer:ENSP00000319734.5Re-query CCDS DB by Nucleotide ID:ENST00000320246Re-query CCDS DB by Protein ID:ENSP00000319734
Original member Current member EBI ENST00000373603.5 ENSP00000362705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373603.5Link to Ensembl Protein Viewer:ENSP00000362705.1Re-query CCDS DB by Nucleotide ID:ENST00000373603Re-query CCDS DB by Protein ID:ENSP00000362705
Original member Current member EBI ENST00000546191.5 ENSP00000441426.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546191.5Link to Ensembl Protein Viewer:ENSP00000441426.1Re-query CCDS DB by Nucleotide ID:ENST00000546191Re-query CCDS DB by Protein ID:ENSP00000441426
Original member Current member EBI ENST00000545174.5 ENSP00000442636.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545174.5Link to Ensembl Protein Viewer:ENSP00000442636.1Re-query CCDS DB by Nucleotide ID:ENST00000545174Re-query CCDS DB by Protein ID:ENSP00000442636
Original member Current member NCBI NM_001166168.2 NP_001159640.1 Accepted alive Link to Nucleotide Sequence:NM_001166168.2Link to Protein Sequence:NP_001159640.1Re-query CCDS DB by Nucleotide ID:NM_001166168Re-query CCDS DB by Protein ID:NP_001159640Link to BLAST:NP_001159640.1
Original member Current member NCBI NM_001166170.2 NP_001159642.1 Accepted alive Link to Nucleotide Sequence:NM_001166170.2Link to Protein Sequence:NP_001159642.1Re-query CCDS DB by Nucleotide ID:NM_001166170Re-query CCDS DB by Protein ID:NP_001159642Link to BLAST:NP_001159642.1
Original member Current member NCBI NM_014397.6 NP_055212.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014397.6Link to Protein Sequence:NP_055212.2Re-query CCDS DB by Nucleotide ID:NM_014397Re-query CCDS DB by Protein ID:NP_055212Link to BLAST:NP_055212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159640.1 313 Q9HC98-1 313 100% 0 0
NP_001159642.1 313 Q9HC98-1 313 100% 0 0
NP_055212.2 313 Q9HC98-1 313 100% 0 0

Chromosomal Locations for CCDS 6854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124301965 124302054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124312509 124312649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124313923 124313985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124321459 124321569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124326330 124326438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124327338 124327445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124339571 124339665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124347709 124347822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124350837 124350947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCAGGACAGCCCGGCCACATGCCCCATGGAGGGAGTTCCAACAACCTCTGCCACACCCTGGGGCCTG
TGCATCCTCCTGACCCACAGAGGCATCCCAACACGCTGTCTTTTCGCTGCTCGCTGGCGGACTTCCAGAT
CGAAAAGAAGATAGGCCGAGGACAGTTCAGCGAGGTGTACAAGGCCACCTGCCTGCTGGACAGGAAGACA
GTGGCTCTGAAGAAGGTGCAGATCTTTGAGATGATGGACGCCAAGGCGAGGCAGGACTGTGTCAAGGAGA
TCGGCCTCTTGAAGCAACTGAACCACCCAAATATCATCAAGTATTTGGACTCGTTTATCGAAGACAACGA
GCTGAACATTGTGCTGGAGTTGGCTGACGCAGGGGACCTCTCGCAGATGATCAAGTACTTTAAGAAGCAG
AAGCGGCTCATCCCGGAGAGGACAGTATGGAAGTACTTTGTGCAGCTGTGCAGCGCCGTGGAGCACATGC
ATTCACGCCGGGTGATGCACCGAGACATCAAGCCTGCCAACGTGTTCATCACAGCCACGGGCGTCGTGAA
GCTCGGTGACCTTGGTCTGGGCCGCTTCTTCAGCTCTGAGACCACCGCAGCCCACTCCCTAGTGGGGACG
CCCTACTACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTTCAAGTCCGACATCTGGTCCCTGG
GCTGTCTGCTGTACGAGATGGCAGCCCTCCAGAGCCCCTTCTATGGAGATAAGATGAATCTCTTCTCCCT
GTGCCAGAAGATCGAGCAGTGTGACTACCCCCCACTCCCCGGGGAGCACTACTCCGAGAAGTTACGAGAA
CTGGTCAGCATGTGCATCTGCCCTGACCCCCACCAGAGACCTGACATCGGATACGTGCACCAGGTGGCCA
AGCAGATGCACATCTGGATGTCCAGCACCTGA

Translation (313 aa):
MAGQPGHMPHGGSSNNLCHTLGPVHPPDPQRHPNTLSFRCSLADFQIEKKIGRGQFSEVYKATCLLDRKT
VALKKVQIFEMMDAKARQDCVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQ
KRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSETTAAHSLVGT
PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPGEHYSEKLRE
LVSMCICPDPHQRPDIGYVHQVAKQMHIWMSST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH