NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS66300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66300.1 Public Homo sapiens 12 SLC2A14 24 110 108 CCDS HistoryNCBI Gene:144195Re-query CCDS DB by CCDS ID:66300.1Re-query CCDS DB by GeneID:144195See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535295.5 ENSP00000440492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535295.5Link to Ensembl Protein Viewer:ENSP00000440492.1Re-query CCDS DB by Nucleotide ID:ENST00000535295Re-query CCDS DB by Protein ID:ENSP00000440492
Original member Current member EBI ENST00000542546.5 ENSP00000443903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542546.5Link to Ensembl Protein Viewer:ENSP00000443903.1Re-query CCDS DB by Nucleotide ID:ENST00000542546Re-query CCDS DB by Protein ID:ENSP00000443903
Original member Current member NCBI NM_001286236.2 NP_001273165.1 Accepted alive Link to Nucleotide Sequence:NM_001286236.2Link to Protein Sequence:NP_001273165.1Re-query CCDS DB by Nucleotide ID:NM_001286236Re-query CCDS DB by Protein ID:NP_001273165Link to BLAST:NP_001273165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273165.1 411 Q8TDB8-4 411 100% 0 0

Chromosomal Locations for CCDS 66300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7814316 7814534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7817831 7818034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7819482 7819583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7821221 7821325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7827495 7827682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7828704 7828866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7829766 7830006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7832722 7832735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCTCCTGAGACGGCGCAATTCAATGCTGATTGTCAACCTGTTGGCTGCCACTGGTGGCTGCCTTATGG
GACTGTGTAAAATAGCTGAGTCAGTTGAAATGCTGATCCTGGGCCGCTTGGTTATTGGCCTCTTCTGCGG
ACTCTGCACAGGTTTTGTGCCCATGTACATTGGAGAGATCTCGCCTACTGCCCTGAGGGGTGCCTTTGGC
ACTCTCAACCAGCTGGGCATAGTTATTGGAATTCTGGTGGCCCAGATCTTTGGTCTGGAACTCATCCTTG
GGTCTGAAGAGCTATGGCCGGTGCTATTAGGCTTTACCATCCTTCCAGCTATCCTGCAAAGTGCAGCCCT
TCCATGTTGCCCTGAAAGTCCCAGATTTTTGCTCATTAACAGAAAAAAAGAGGAGAATGCTACGCGGATC
CTCCAGCGGTTGTGGGGCACCCAGGATGTATCCCAAGACATCCAGGAGATGAAAGATGAGAGTGCAAGGA
TGTCACAAGAAAAGCAAGTCACCGTGCTGGAGCTCTTTAGAGTGTCCAGCTACCGACAGCCCATCATCAT
TTCCATTGTGCTCCAGCTCTCTCAGCAGCTCTCTGGGATCAATGCTGTGTTCTATTACTCAACAGGAATC
TTCAAGGATGCAGGTGTTCAACAGCCCATCTATGCCACCATCAGCGCGGGTGTGGTTAATACTATCTTCA
CTTTACTTTCTCTATTTCTGGTGGAAAGGGCAGGAAGAAGGACTCTGCATATGATAGGCCTTGGAGGGAT
GGCTTTTTGTTCCACGCTCATGACTGTTTCTTTGTTATTAAAGAATCACTATAATGGGATGAGCTTTGTC
TGTATTGGGGCTATCTTGGTCTTTGTGGCCTGTTTTGAAATTGGACCAGGCCCCATTCCCTGGTTTATTG
TGGCCGAACTCTTCAGCCAGGGCCCCCGCCCAGCTGCGATGGCAGTGGCCGGCTGCTCCAACTGGACCTC
CAACTTCCTAGTCGGATTGCTCTTCCCCTCTGCTGCTTACTATTTAGGAGCCTACGTTTTTATTATCTTC
ACCGGCTTCCTCATTACCTTCTTGGCCTTTACCTTCTTCAAAGTCCCTGAGACCCGTGGCAGGACTTTTG
AGGATATCACACGGGCCTTTGAAGGGCAGGCACACGGTGCAGATAGATCTGGGAAGGACGGCGTCATGGG
GATGAACAGCATCGAGCCTGCTAAGGAGACCACCACCAATGTCTAA

Translation (411 aa):
MLLRRRNSMLIVNLLAATGGCLMGLCKIAESVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFG
TLNQLGIVIGILVAQIFGLELILGSEELWPVLLGFTILPAILQSAALPCCPESPRFLLINRKKEENATRI
LQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGI
FKDAGVQQPIYATISAGVVNTIFTLLSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKNHYNGMSFV
CIGAILVFVACFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAYYLGAYVFIIF
TGFLITFLAFTFFKVPETRGRTFEDITRAFEGQAHGADRSGKDGVMGMNSIEPAKETTTNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH