NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI
WTSI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
RefSeq


Report for CCDS6454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6454.1 Public Homo sapiens 9 CDC37L1 22 109 92 CCDS HistoryNCBI Gene:55664Re-query CCDS DB by CCDS ID:6454.1Re-query CCDS DB by GeneID:55664See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000381854.3 ENSP00000371278.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381854.3Link to Ensembl Protein Viewer:ENSP00000371278.3Re-query CCDS DB by Nucleotide ID:ENST00000381854Re-query CCDS DB by Protein ID:ENSP00000371278
Original member NCBI NM_017913.3 NP_060383.2 Updated not alive Link to Nucleotide Sequence:NM_017913.3Link to Protein Sequence:NP_060383.2Re-query CCDS DB by Nucleotide ID:NM_017913Re-query CCDS DB by Protein ID:NP_060383
Current member NCBI NM_017913.4 NP_060383.2 Accepted alive Link to Nucleotide Sequence:NM_017913.4Link to Protein Sequence:NP_060383.2Re-query CCDS DB by Nucleotide ID:NM_017913Re-query CCDS DB by Protein ID:NP_060383Link to BLAST:NP_060383.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060383.2 337 Q7L3B6 337 100% 0 0

Chromosomal Locations for CCDS 6454.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4679768 4679899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4684877 4685158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4688513 4688606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4697096 4697211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4697757 4697879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4701864 4702028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4706011 4706112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAACAACCGTGGCCGCCTCCGGGACCCTGGAGCCTCCCTCGGGCCGAGGGTGAGGCTGAGGAAGAGA
GT
GACTTCGACGTGTTCCCCAGTTCTCCCCGCTGCCCGCAGCTGCCAGGCGGCGGCGCCCAGATGTATAG
C
CATGGAATTGAATTGGCTTGCCAAAAGCAGAAAGAGTTTGTGAAGAGCTCTGTGGCGTGCAAATGGAAT
CTT
GCTGAAGCTCAACAGAAACTTGGTAGCTTAGCACTGCATAATTCTGAGTCCTTGGATCAGGAGCATG
CC
AAAGCACAAACAGCAGTATCAGAACTGAGGCAACGGGAAGAAGAGTGGCGACAGAAAGAAGAAGCTCT
A
GTACAAAGAGAGAAGATGTGTCTGTGGAGCACGGATGCCATTAGCAAGGATGTTTTTAATAAGAGTTTT
ATT
AATCAAGATAAAAGAAAAGACACAGAAGATGAAGATAAATCAGAATCATTTATGCAAAAATATGAGC
AA
AAAATCAGACATTTTGGTATGTTGAGTCGATGGGATGATAGCCAGAGATTTTTGTCTGACCATCCATA
C
CTTGTATGTGAAGAAACTGCTAAATATCTTATTTTATGGTGTTTTCACCTGGAAGCTGAGAAGAAAGGG
GCT
TTAATGGAACAAATAGCACATCAAGCTGTTGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGTA
AT
GTGGATCCAAGAGGGTGTTTTCGTTTATTTTTCCAGAAAGCCAAAGCAGAGGAAGAAGGTTATTTTGA
A
GCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATTCTCAATCACAAAGTTTTCAA
CCT
ATGACAGTTCAGAATCATGTTCCCCATTCTGGTGTTGGATCTATAGGTTTATTAGAATCCTTACCAC
AG
AATCCAGATTATCTTCAGTATTCTATCAGTACAGCTCTCTGCAGCTTAAACTCGGTGGTACATAAAGA
A
GATGATGAACCCAAAATGATGGACACTGTATAA


Translation (337 aa):
MEQPWPPPGPWSLPRAEGEAEEESDFDVFPSSPRCPQLPGGGAQMYSHGIELACQKQKEFVKSSVACKWN
L
AEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNK
SF
I
NQDKRKDTEDEDKSESFMQKYEQKIRHF
GMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEKKG
A
LMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAK
AEEEGYFEAFKNELEAFKSRVRLYSQSQSFQ
P
MTVQNHVPHSGVGSIGLLESLPQ
NPDYLQYSISTALCSLNSVVHKEDDEPKMMDTV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser