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Report for CCDS63565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63565.1 Public Homo sapiens 3 BTD 24 110 108 CCDS HistoryNCBI Gene:686Re-query CCDS DB by CCDS ID:63565.1Re-query CCDS DB by GeneID:686See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 63565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303498.10 ENSP00000306477.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303498.10Link to Ensembl Protein Viewer:ENSP00000306477.6Re-query CCDS DB by Nucleotide ID:ENST00000303498Re-query CCDS DB by Protein ID:ENSP00000306477
Original member Current member EBI ENST00000449107.7 ENSP00000388212.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449107.7Link to Ensembl Protein Viewer:ENSP00000388212.2Re-query CCDS DB by Nucleotide ID:ENST00000449107Re-query CCDS DB by Protein ID:ENSP00000388212
Original member Current member EBI ENST00000427382.2 ENSP00000397113.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427382.2Link to Ensembl Protein Viewer:ENSP00000397113.2Re-query CCDS DB by Nucleotide ID:ENST00000427382Re-query CCDS DB by Protein ID:ENSP00000397113
Original member Current member EBI ENST00000437172.6 ENSP00000400995.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437172.6Link to Ensembl Protein Viewer:ENSP00000400995.2Re-query CCDS DB by Nucleotide ID:ENST00000437172Re-query CCDS DB by Protein ID:ENSP00000400995
Original member Current member EBI ENST00000643237.3 ENSP00000495254.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000643237.3Link to Ensembl Protein Viewer:ENSP00000495254.2Re-query CCDS DB by Nucleotide ID:ENST00000643237Re-query CCDS DB by Protein ID:ENSP00000495254
Original member Current member EBI ENST00000646371.1 ENSP00000495866.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646371.1Link to Ensembl Protein Viewer:ENSP00000495866.1Re-query CCDS DB by Nucleotide ID:ENST00000646371Re-query CCDS DB by Protein ID:ENSP00000495866
Original member NCBI NM_001281723.3 NP_001268652.2 Updated not alive Link to Nucleotide Sequence:NM_001281723.3Link to Protein Sequence:NP_001268652.2Re-query CCDS DB by Nucleotide ID:NM_001281723Re-query CCDS DB by Protein ID:NP_001268652
Current member NCBI NM_001281723.4 NP_001268652.2 Accepted alive Link to Nucleotide Sequence:NM_001281723.4Link to Protein Sequence:NP_001268652.2Re-query CCDS DB by Nucleotide ID:NM_001281723Re-query CCDS DB by Protein ID:NP_001268652Link to BLAST:NP_001268652.2
Original member Current member NCBI NM_001281724.3 NP_001268653.2 Accepted alive Link to Nucleotide Sequence:NM_001281724.3Link to Protein Sequence:NP_001268653.2Re-query CCDS DB by Nucleotide ID:NM_001281724Re-query CCDS DB by Protein ID:NP_001268653Link to BLAST:NP_001268653.2
Original member NCBI NM_001281725.2 NP_001268654.1 Updated not alive Link to Nucleotide Sequence:NM_001281725.2Link to Protein Sequence:NP_001268654.1Re-query CCDS DB by Nucleotide ID:NM_001281725Re-query CCDS DB by Protein ID:NP_001268654
Current member NCBI NM_001281725.3 NP_001268654.1 Accepted alive Link to Nucleotide Sequence:NM_001281725.3Link to Protein Sequence:NP_001268654.1Re-query CCDS DB by Nucleotide ID:NM_001281725Re-query CCDS DB by Protein ID:NP_001268654Link to BLAST:NP_001268654.1
Original member NCBI NM_001323582.1 NP_001310511.1 Updated not alive Link to Nucleotide Sequence:NM_001323582.1Link to Protein Sequence:NP_001310511.1Re-query CCDS DB by Nucleotide ID:NM_001323582Re-query CCDS DB by Protein ID:NP_001310511
Current member NCBI NM_001323582.2 NP_001310511.1 Accepted alive Link to Nucleotide Sequence:NM_001323582.2Link to Protein Sequence:NP_001310511.1Re-query CCDS DB by Nucleotide ID:NM_001323582Re-query CCDS DB by Protein ID:NP_001310511Link to BLAST:NP_001310511.1
Original member Current member NCBI NM_001370658.1 NP_001357587.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370658.1Link to Protein Sequence:NP_001357587.1Re-query CCDS DB by Nucleotide ID:NM_001370658Re-query CCDS DB by Protein ID:NP_001357587Link to BLAST:NP_001357587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268652.2 523 P43251-4 523 100% 0 0
NP_001268653.2 523 P43251-4 523 100% 0 0
NP_001268654.1 523 P43251-4 523 100% 0 0
NP_001310511.1 523 P43251-4 523 100% 0 0
NP_001357587.1 523 P43251-4 523 100% 0 0

Chromosomal Locations for CCDS 63565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15635440 15635688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15641908 15642057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15644316 15645488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGTCTGGAGCCAGAAGTAAGCTTGCTCTTTTCCTCTGCGGCTGTTACGTGGTTGCCCTGGGAGCCCACA
CCGGGGAGGAGAGCGTGGCTGACCATCACGAGGCTGAATATTATGTGGCTGCCGTGTATGAGCATCCATC
CATCCTGAGTCTGAACCCTCTGGCTCTCATCAGCCGCCAAGAGGCCTTGGAGCTCATGAACCAGAACCTT
GACATCTATGAACAGCAAGTGATGACTGCAGCCCAAAAGGATGTACAGATTATAGTGTTTCCAGAAGATG
GCATTCATGGATTCAACTTTACAAGAACATCCATTTATCCATTTTTGGACTTCATGCCGTCTCCCCAGGT
GGTCAGGTGGAACCCATGCCTGGAGCCTCACCGCTTCAATGACACAGAGGTGCTCCAGCGCCTGAGTTGT
ATGGCCATCAGGGGAGATATGTTCTTGGTGGCCAATCTTGGGACAAAGGAGCCTTGTCATAGCAGTGACC
CAAGGTGCCCAAAAGATGGGAGATACCAGTTCAACACAAATGTCGTGTTCAGCAATAATGGAACCCTTGT
TGACCGCTACCGTAAACACAACCTCTACTTTGAGGCAGCATTCGATGTTCCTCTTAAAGTGGATCTCATC
ACCTTTGATACCCCCTTTGCTGGCAGGTTTGGCATCTTCACATGCTTTGATATATTGTTCTTTGACCCTG
CCATCAGAGTCCTCAGAGACTACAAGGTGAAGCATGTTGTGTACCCAACTGCCTGGATGAACCAGCTCCC
ACTCTTGGCAGCAATTGAGATTCAGAAAGCTTTTGCTGTTGCCTTTGGCATCAACGTTCTGGCAGCTAAT
GTCCACCACCCAGTTCTGGGGATGACAGGAAGTGGCATACACACCCCTCTGGAGTCCTTTTGGTACCATG
ACATGGAAAATCCCAAAAGTCACCTTATAATTGCCCAGGTGGCCAAAAATCCAGTGGGTCTCATTGGTGC
AGAGAATGCAACAGGTGAAACGGACCCATCCCATAGTAAGTTTTTAAAAATTTTGTCAGGCGATCCGTAC
TGTGAGAAGGATGCTCAGGAAGTCCACTGTGATGAGGCCACCAAGTGGAACGTGAATGCTCCTCCCACAT
TTCACTCTGAGATGATGTATGACAATTTCACCCTGGTCCCTGTCTGGGGAAAGGAAGGCTATCTCCACGT
CTGTTCCAATGGCCTCTGCTGTTATTTACTTTACGAGAGGCCCACCTTATCCAAAGAGCTGTATGCCCTG
GGGGTCTTTGATGGGCTTCACACAGTACATGGCACTTACTACATCCAAGTGTGTGCCCTGGTCAGGTGTG
GGGGTCTTGGCTTCGACACCTGTGGACAGGAAATCACAGAGGCCACGGGGATATTTGAGTTTCACCTGTG
GGGCAACTTCAGTACTTCCTATATCTTTCCTTTGTTTCTGACCTCAGGGATGACCCTAGAAGTCCCTGAC
CAGCTTGGCTGGGAGAATGACCACTATTTCCTGAGGAAAAGTAGGCTGTCCTCTGGGCTGGTGACGGCGG
CTCTCTATGGGCGCTTGTATGAGAGGGACTAG

Translation (523 aa):
MSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNL
DIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSC
MAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLI
TFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAAN
VHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPY
CEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYAL
GVFDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPD
QLGWENDHYFLRKSRLSSGLVTAALYGRLYERD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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