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Report for CCDS6147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6147.1 Public Homo sapiens 8 SNTG1 24 110 108 CCDS HistoryNCBI Gene:54212Re-query CCDS DB by CCDS ID:6147.1Re-query CCDS DB by GeneID:54212See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518864.5 ENSP00000429276.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518864.5Link to Ensembl Protein Viewer:ENSP00000429276.1Re-query CCDS DB by Nucleotide ID:ENST00000518864Re-query CCDS DB by Protein ID:ENSP00000429276
Original member Current member EBI ENST00000642720.2 ENSP00000493900.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642720.2Link to Ensembl Protein Viewer:ENSP00000493900.1Re-query CCDS DB by Nucleotide ID:ENST00000642720Re-query CCDS DB by Protein ID:ENSP00000493900
Original member Current member NCBI NM_001287813.3 NP_001274742.1 Accepted alive Link to Nucleotide Sequence:NM_001287813.3Link to Protein Sequence:NP_001274742.1Re-query CCDS DB by Nucleotide ID:NM_001287813Re-query CCDS DB by Protein ID:NP_001274742Link to BLAST:NP_001274742.1
Original member Current member NCBI NM_001321773.2 NP_001308702.1 Accepted alive Link to Nucleotide Sequence:NM_001321773.2Link to Protein Sequence:NP_001308702.1Re-query CCDS DB by Nucleotide ID:NM_001321773Re-query CCDS DB by Protein ID:NP_001308702Link to BLAST:NP_001308702.1
Original member Current member NCBI NM_018967.5 NP_061840.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018967.5Link to Protein Sequence:NP_061840.1Re-query CCDS DB by Nucleotide ID:NM_018967Re-query CCDS DB by Protein ID:NP_061840Link to BLAST:NP_061840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274742.1 517 Q9NSN8-1 517 100% 0 0
NP_001308702.1 517 Q9NSN8-1 517 100% 0 0
NP_061840.1 517 Q9NSN8-1 517 100% 0 0

Chromosomal Locations for CCDS 6147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 50394239 50394265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50402210 50402344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50438543 50438599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50449668 50449725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50450556 50450599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50450688 50450729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50502778 50502880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50530177 50530259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50536678 50536808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50553050 50553179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50590879 50590917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50656909 50657025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50658592 50658663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50704600 50704752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50708886 50708978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50752001 50752111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50792671 50792829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGATTTCAGAACCGCCTGTGAGGAGACAAAGACAGGAATTTGTTTGCTGCAGGATGGTAACCAGGAGC
CTTTCAAAGTGCGGCTGCACCTAGCCAAAGACATTTTGATGATCCAGGAACAGGATGTGATATGTGTGTC
TGGTGAGCCTTTCTATTCTGGTGAAAGAACGGTGACCATCAGAAGACAAACAGTAGGAGGATTTGGATTA
AGCATAAAGGGAGGAGCAGAACATAACATTCCAGTTGTCGTTTCAAAAATCTCCAAGGAACAAAGAGCGG
AACTTTCAGGACTACTTTTTATTGGAGATGCAATTCTACAGATAAATGGCATTAATGTGAGAAAATGTAG
ACATGAAGAAGTGGTTCAGGTTCTTCGGAATGCTGGAGAAGAAGTGACTCTAACAGTGTCATTTTTAAAA
AGAGCACCTGCTTTCCTCAAACTCCCATTGAATGAAGATTGTGCATGTGCTCCAAGTGACCAGAGCAGTG
GCACCTCCTCTCCTCTCTGTGACAGTGGCTTACATCTCAACTACCATCCCAACAATACAGACACATTATC
ATGCTCGTCGTGGCCGACGTCTCCAGGCTTGAGGTGGGAGAAGCGATGGTGCGACCTCAGACTGATCCCT
CTACTTCATTCGCGCTTCTCTCAGTATGTGCCCGGCACAGATTTGAGTCGGCAGAATGCCTTTCAAGTCA
TTGCTGTGGATGGGGTCTGCACTGGGATTATTCAGTGCCTCTCTGCTGAAGACTGCGTTGACTGGCTACA
AGCAATAGCAACTAACATTTCAAATCTCACAAAGCACAATATTAAAAAAATCAACAGAAACTTTCCTGTA
AACCAGCAGATTGTCTACATGGGCTGGTGTGAAGCCCGGGAGCAAGACCCCCTCCAGGACAGAGTGTACT
CCCCGACCTTCCTGGCCCTGAGGGGCTCATGTCTCTACAAGTTTCTGGCACCTCCAGTGACCACCTGGGA
CTGGACGAGAGCAGAGAAAACATTCTCAGTTTATGAGATTATGTGCAAGATCCTCAAGGACAGTGACCTG
CTGGACCGACGGAAACAGTGCTTCACCGTGCAGTCTGAGTCTGGGGAGGACCTGTACTTCTCAGTGGAGC
TGGAAAGTGACCTCGCCCAGTGGGAAAGAGCCTTCCAGACAGCAACCTTTCTAGAAGTAGAACGGATACA
GTGCAAGACCTATGCATGTGTGCTAGAAAGTCATCTAATGGGACTCACAATTGATTTCAGCACAGGATTT
ATCTGCTTTGATGCTGCAACAAAGGCTGTCCTTTGGAGGTATAAATTCTCTCAGCTTAAAGGTTCTTCAG
ATGATGGCAAGAGCAAAATCAAATTTTTGTTTCAGAATCCAGATACTAAACAGATTGAAGCAAAGGAGTT
GGAATTTTCTAATTTATTTGCTGTTCTTCACTGCATTCATTCCTTCTTTGCTGCCAAGGTAGCTTGTTTG
GACCCTCTATTTTTAGGCAATCAAGCTACTGCTTCTACTGCTGCCAGCTCTGCTACCACGAGCAAAGCAA
AGTATACAACTTGA

Translation (517 aa):
MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTIRRQTVGGFGL
SIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLK
RAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHPNNTDTLSCSSWPTSPGLRWEKRWCDLRLIP
LLHSRFSQYVPGTDLSRQNAFQVIAVDGVCTGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPV
NQQIVYMGWCEAREQDPLQDRVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDL
LDRRKQCFTVQSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF
ICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACL
DPLFLGNQATASTAASSATTSKAKYTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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