NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS611.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
611.2 Public Homo sapiens 1 FGGY 24 110 108 CCDS HistoryNCBI Gene:55277Re-query CCDS DB by CCDS ID:611.2Re-query CCDS DB by GeneID:55277See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 611.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update completes the FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain, which was previously truncated.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 611.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303721.12 ENSP00000305922.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303721.12Link to Ensembl Protein Viewer:ENSP00000305922.8Re-query CCDS DB by Nucleotide ID:ENST00000303721Re-query CCDS DB by Protein ID:ENSP00000305922
Original member Current member NCBI NM_001350791.2 NP_001337720.1 Accepted alive Link to Nucleotide Sequence:NM_001350791.2Link to Protein Sequence:NP_001337720.1Re-query CCDS DB by Nucleotide ID:NM_001350791Re-query CCDS DB by Protein ID:NP_001337720Link to BLAST:NP_001337720.1
Original member Current member NCBI NM_018291.5 NP_060761.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018291.5Link to Protein Sequence:NP_060761.3Re-query CCDS DB by Nucleotide ID:NM_018291Re-query CCDS DB by Protein ID:NP_060761Link to BLAST:NP_060761.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337720.1 551 Q96C11-1 551 100% 0 0
NP_060761.3 551 Q96C11-1 551 100% 0 0

Chromosomal Locations for CCDS 611.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59321550 59321750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59339958 59340069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59346247 59346398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59378749 59378837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59456961 59457076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59512311 59512439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59554124 59554227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59607803 59607910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59625988 59626049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59638228 59638375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59660219 59660293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59667283 59667403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59674039 59674133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59757931 59757992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59762503 59762584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGTCTGGTGGAGAACAGAAACCAGAGAGGTACTATGTGGGTGTGGACGTTGGAACAGGCAGTGTCCGTG
CAGCTCTGGTGGACCAGAGTGGGGTCCTGTTGGCTTTTGCAGACCAGCCAATTAAGAATTGGGAGCCCCA
GTTCAACCACCATGAGCAGTCCTCCGAGGACATCTGGGCTGCGTGCTGTGTTGTCACAAAGAAAGTTGTA
CAAGGGATTGATTTAAACCAAATTCGAGGACTTGGGTTTGATGCCACGTGTTCTCTGGTTGTTTTGGATA
AGCAGTTTCACCCATTACCAGTCAACCAGGAAGGGGATTCCCATCGAAACGTCATCATGTGGCTGGACCA
TCGAGCAGTCAGTCAAGTTAACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTCGGGGGGGTG
ATGTCTGTGGAAATGCAGGCCCCGAAACTTCTGTGGCTGAAAGAGAACTTGAGAGAGATTTGCTGGGATA
AGGCGGGACATTTCTTTGATCTCCCGGACTTCTTATCGTGGAAGGCAACAGGTGTCACAGCACGGTCTCT
CTGCTCCCTGGTGTGTAAGTGGACATATTCAGCAGAGAAAGGCTGGGACGACAGTTTCTGGAAAATGATT
GGTTTGGAAGACTTTGTTGCAGATAATTACAGCAAAATAGGAAACCAAGTGCTACCTCCTGGAGCTTCTC
TTGGAAATGGGCTCACACCAGAGGCAGCAAGAGACCTTGGCCTTCTCCCTGGGATTGCGGTCGCAGCTTC
ACTCATTGATGCCCATGCAGGAGGACTAGGAGTGATTGGGGCAGATGTGAGAGGGCACGGCCTCATCTGT
GAGGGGCAGCCAGTGACGTCACGGCTGGCTGTCATCTGTGGAACGTCTTCTTGTCACATGGGGATCAGCA
AAGACCCGATTTTTGTACCAGGCGTCTGGGGGCCTTATTTCTCAGCCATGGTACCTGGGTTCTGGCTGAA
TGAAGGTGGTCAGAGCGTTACTGGAAAATTGATAGACCACATGGTACAAGGCCATGCTGCTTTTCCAGAA
CTACAAGTAAAGGCCACAGCCAGATGCCAGAGTATATATGCATATTTGAACAGTCACCTGGATCTGATTA
AGAAGGCTCAGCCTGTGGGTTTCCTTACTGTTGATTTACATGTTTGGCCAGATTTCCATGGCAACCGGTC
TCCCTTAGCAGATCTGACACTAAAGGGCATGGTCACCGGATTGAAACTGTCTCAGGACCTTGATGATCTT
GCCATTCTCTACCTGGCCACAGTTCAAGCCATTGCTTTGGGGACTCGCTTCATTATAGAAGCCATGGAGG
CAGCAGGGCACTCAATCAGTACTCTTTTCCTATGTGGAGGCCTCAGCAAGAATCCCCTTTTTGTGCAAAT
GCATGCGGACATTACTGGCATGCCTGTGGTCCTGTCGCAAGAGGTGGAGTCCGTTCTTGTGGGTGCTGCT
GTTCTGGGTGCCTGTGCCTCAGGGGATTTCGCTTCTGTACAGGAAGCAATGGCAAAAATGAGCAAAGTTG
GGAAAGTTGTGTTCCCGAGACTACAGGATAAAAAATACTATGATAAGAAATACCAAGTATTCCTGAAGCT
GGTTGAACACCAGAAGGAGTATTTGGCGATCATGAATGATGACTGA

Translation (551 aa):
MSGGEQKPERYYVGVDVGTGSVRAALVDQSGVLLAFADQPIKNWEPQFNHHEQSSEDIWAACCVVTKKVV
QGIDLNQIRGLGFDATCSLVVLDKQFHPLPVNQEGDSHRNVIMWLDHRAVSQVNRINETKHSVLQYVGGV
MSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKMI
GLEDFVADNYSKIGNQVLPPGASLGNGLTPEAARDLGLLPGIAVAASLIDAHAGGLGVIGADVRGHGLIC
EGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPE
LQVKATARCQSIYAYLNSHLDLIKKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDL
AILYLATVQAIALGTRFIIEAMEAAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAA
VLGACASGDFASVQEAMAKMSKVGKVVFPRLQDKKYYDKKYQVFLKLVEHQKEYLAIMNDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH