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Report for CCDS60720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60720.1 Public Homo sapiens 11 ZNF143 24 110 108 CCDS HistoryNCBI Gene:7702Re-query CCDS DB by CCDS ID:60720.1Re-query CCDS DB by GeneID:7702See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396604.5 ENSP00000379849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396604.5Link to Ensembl Protein Viewer:ENSP00000379849.1Re-query CCDS DB by Nucleotide ID:ENST00000396604Re-query CCDS DB by Protein ID:ENSP00000379849
Original member Current member EBI ENST00000530463.5 ENSP00000432154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530463.5Link to Ensembl Protein Viewer:ENSP00000432154.1Re-query CCDS DB by Nucleotide ID:ENST00000530463Re-query CCDS DB by Protein ID:ENSP00000432154
Original member Current member NCBI NM_001282656.2 NP_001269585.1 Accepted alive Link to Nucleotide Sequence:NM_001282656.2Link to Protein Sequence:NP_001269585.1Re-query CCDS DB by Nucleotide ID:NM_001282656Re-query CCDS DB by Protein ID:NP_001269585Link to BLAST:NP_001269585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269585.1 637 P52747-3 637 100% 0 0

Chromosomal Locations for CCDS 60720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 9471309 9471420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9472677 9472769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9473941 9474024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9474553 9474633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9478390 9478586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9479472 9479546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9494646 9494765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9496303 9496378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9497675 9497800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9501091 9501270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9508619 9508846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9512448 9512596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9516201 9516362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9525240 9525386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9527530 9527613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGTTGTTAGCCCAAATAAATCGAGATTCTCAGGGAATGACAGAGTTTCCTGGAGGAGGGATGGAGGCGC
AACATGTTACGCTGTGCTTGACAGAGGCAGTCACCGTGGCAGATGGTGACAACTTAGAAAATATGGAAGG
CGTAAGCTTGCAAGCAGTAACACTTGCAGATGGTTCTACTGCTTACATACAACACAATTCTAAAGATGCA
AAACTCATAGATGGCCAGGTCATTCAGTTGGAAGATGGTTCTGCGGCCTATGTTCAACATGTACCCATAC
CTAAAAGTAGGGACAGTTTGCGTCTAGAGGATGGTCAAGCAGTACAGTTAGAAGATGGTACCACAGCATT
TATTCACCACACCTCCAAAGATAGTTATGACCAGAGTGCATTACAGGCGGTTCAGCTGGAAGATGGTACC
ACAGCTTATATCCACCATGCAGTGCAAGTCCCGCAGTCTGACACCATCTTGGCAATTCAGGCTGATGGGA
CAGTGGCAGGTCTGCACACTGGGGATGCTACAATTGACCCTGACACCATCAGTGCTTTGGAACAGTATGC
AGCAAAGGTGTCCATTGATGGAAGTGAAAGTGTAGCAGGTACTGGAATGATTGGAGAAAATGAGCAAGAG
AAAAAAATGCAGATTGTTTTACAAGGACATGCTACAAGAGTAACTGCTAAATCTCAACAGAGTGGAGAGA
AGGCATTTCGATGTGAATATGATGGATGTGGAAAATTATATACAACAGCTCATCATCTCAAGGTCCATGA
GAGGTCACACACAGGAGATCGGCCTTATCAGTGTGAGCATGCAGGCTGTGGGAAGGCATTTGCAACAGGT
TATGGATTAAAAAGTCACGTCAGAACTCATACAGGAGAAAAGCCATATCGGTGTTCGGAAGATAATTGTA
CTAAATCTTTCAAAACTTCAGGAGATCTACAGAAACACATCAGAACTCATACAGGAGAAAGGCCCTTTAA
GTGTCCCTTCGAAGGCTGCGGTCGGTCCTTTACAACATCAAATATCAGAAAAGTGCACGTTAGGACACAC
ACAGGAGAAAGACCTTATTACTGCACAGAGCCAGGATGTGGGAGGGCATTTGCCAGTGCAACAAATTATA
AAAACCATGTGAGGATACACACAGGAGAAAAGCCATATGTTTGTACAGTTCCTGGGTGTGACAAAAGGTT
TACAGAATATTCCAGTTTGTACAAACATCATGTTGTCCACACTCATTCCAAACCTTACAACTGTAACCAC
TGTGGGAAGACATACAAGCAGATCTCCACGCTGGCCATGCACAAACGGACAGCCCACAACGACACTGAGC
CCATCGAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTCAAGGTGAAGATGTTCTTAAAGGGTC
CCAGATTACGTATGTTACAGGTGTAGAAGGGGACGACGTTGTTTCTACACAAGTAGCCACAGTAACCCAA
TCTGGACTGAGTCAACAAGTTACACTCATATCCCAGGATGGGACTCAGCATGTCAACATATCTCAAGCTG
ACATGCAGGCCATTGGCAACACCATCACAATGGTAACGCAGGATGGCACGCCCATCACAGTCCCCGCCCA
TGATGCAGTCATCTCCTCAGCAGGAACGCACTCTGTTGCTATGGTTACTGCTGAGGGTACAGAAGGGGAA
CAGGTTGCAATTGTAGCTCAAGACTTGGCAGCATTCCATACTGCCTCATCAGAAATGGGGCACCAGCAGC
ATAGCCATCACTTAGTAACCACAGAAACCAGACCTCTGACCTTAGTAGCAACATCCAATGGCACCCAGAT
TGCAGTTCAGCTTGGAGAACAGCCATCTCTGGAAGAAGCCATCAGAATAGCGTCTAGAATCCAACAAGGA
GAAACGCCAGGGTTGGATGATTAA

Translation (637 aa):
MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDA
KLIDGQVIQLEDGSAAYVQHVPIPKSRDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGT
TAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVAGTGMIGENEQE
KKMQIVLQGHATRVTAKSQQSGEKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATG
YGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHVRTH
TGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNH
CGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGEDVLKGSQITYVTGVEGDDVVSTQVATVTQ
SGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAHDAVISSAGTHSVAMVTAEGTEGE
QVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQG
ETPGLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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