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Report for CCDS59959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59959.1 Public Homo sapiens 1 PLCH2 24 110 108 CCDS HistoryNCBI Gene:9651Re-query CCDS DB by CCDS ID:59959.1Re-query CCDS DB by GeneID:9651See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59959.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378486.8 ENSP00000367747.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378486.8Link to Ensembl Protein Viewer:ENSP00000367747.3Re-query CCDS DB by Nucleotide ID:ENST00000378486Re-query CCDS DB by Protein ID:ENSP00000367747
Original member Current member NCBI NM_014638.4 NP_055453.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014638.4Link to Protein Sequence:NP_055453.2Re-query CCDS DB by Nucleotide ID:NM_014638Re-query CCDS DB by Protein ID:NP_055453Link to BLAST:NP_055453.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055453.2 1416 O75038-1 1416 100% 0 0

Chromosomal Locations for CCDS 59959.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 2476589 2476712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2478476 2478622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2479734 2479977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2480183 2480312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2484448 2484618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2486907 2487000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2487173 2487376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2487598 2487718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2489207 2489378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2489760 2489867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2491192 2491335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2494856 2494948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2495488 2495570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2496607 2496704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2496828 2497010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2497502 2497609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2498523 2498647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2498744 2498828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2499084 2499230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2499641 2499720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2502112 2502409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2503922 2505213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4251 nt):
ATGTCTGGTCCATGGCCCTCCCCCGACAGCCGGACCAAGGGAACGGTGGCCTGGCTGGCGGAGGTACTCC
TCTGGGTTGGAGGGAGTGTGGTGCTGTCTTCAGAGTGGCAGCTCGGCCCCCTGGTGGAGCGGTGCATGGG
TGCCATGCAAGAGGGGATGCAGATGGTGAAGCTGCGTGGCGGCTCCAAGGGCCTGGTCCGCTTCTACTAC
CTGGACGAGCACCGCTCCTGCATCCGCTGGAGGCCCTCACGCAAGAACGAGAAGGCCAAGATCTCCATCG
ACTCCATCCAGGAGGTGAGTGAGGGGCGGCAGTCGGAGGTCTTCCAGCGCTACCCTGACGGCAGCTTCGA
CCCCAACTGCTGCTTCAGCATCTACCACGGCAGCCACCGCGAGTCGCTGGACCTGGTCTCCACCAGCAGC
GAGGTGGCGCGCACCTGGGTCACTGGCCTGCGCTACCTCATGGCCGGCATCAGCGACGAGGACAGCCTGG
CTCGCCGCCAGCGCACCAGGGACCAGTGGCTGAAGCAGACGTTTGACGAGGCCGACAAGAACGGGGATGG
CAGCCTGAGCATTGGCGAGGTCCTGCAGCTGCTGCACAAGCTCAACGTGAACCTGCCCCGGCAGAGGGTG
AAGCAGATGTTCAGGGAAGCGGACACGGATGACCACCAAGGGACGCTGGGTTTTGAAGAGTTCTGTGCCT
TCTACAAGATGATGTCCACCCGCCGGGACCTCTACCTGCTCATGCTGACCTACAGCAACCACAAGGACCA
CCTGGATGCCGCCAGCCTGCAGCGCTTCCTGCAGGTGGAGCAGAAGATGGCGGGTGTGACCCTCGAGAGC
TGCCAGGACATCATCGAGCAGTTTGAGCCATGCCCAGAAAACAAGAGTAAGGGGCTGCTGGGCATTGATG
GCTTCACCAACTACACCAGGAGCCCTGCTGGTGACATCTTCAACCCTGAGCACCACCATGTGCACCAGGA
CATGACGCAGCCGCTGAGCCACTACTTCATCACCTCGTCCCACAACACCTACCTCGTGGGTGACCAGCTC
ATGTCCCAGTCACGGGTGGACATGTATGCTTGGGTCCTGCAGGCTGGCTGCCGCTGCGTGGAGGTGGACT
GCTGGGATGGGCCCGACGGGGAGCCCATTGTGCACCATGGCTACACTCTGACTTCCAAGATCCTCTTCAA
AGACGTCATTGAAACCATCAACAAATATGCCTTCATCAAGAATGAGTACCCAGTGATCCTGTCCATCGAA
AACCACTGCAGTGTCATCCAGCAGAAGAAAATGGCCCAGTATCTGACTGACATCCTTGGGGACAAGCTGG
ACCTGTCATCAGTGAGCAGTGAAGATGCCACCACACTCCCCTCTCCACAGATGCTCAAGGGCAAGATCCT
CGTGAAGGGGAAGAAGCTCCCAGCCAACATCAGCGAGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGAC
AGTGCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGATGCATCCACCAATCGAAAGCGTGTAG
AAAACACTGCTAAGAGGAAACTGGATTCCCTCATCAAAGAGTCGAAGATTCGGGACTGTGAGGACCCCAA
CAACTTCTCCGTCTCCACACTGTCCCCATCTGGAAAGCTCGGACGCAAGAGCAAGGCTGAAGAGGACGTG
GAGTCTGGGGAGGATGCCGGGGCCAGCAGACGCAATGGCCGCCTCGTCGTGGGAAGCTTCTCCAGGCGCA
AGAAGAAGGGCAGCAAGCTGAAGAAGGCGGCCAGCGTGGAGGAGGGAGATGAGGGTCAGGACTCCCCGGG
AGGCCAGAGCCGAGGGGCGACCCGGCAGAAGAAGACCATGAAGCTGTCCCGGGCCCTCTCTGACCTGGTG
AAGTACACCAAGTCCGTGGCCACCCACGACATAGAGATGGAGGCGGCGTCCAGCTGGCAGGTGTCGTCCT
TCAGCGAGACCAAGGCCCACCAGATTCTGCAGCAGAAGCCGGCGCAGTACCTACGCTTCAACCAGCAGCA
GCTCTCCCGCATCTACCCCTCCTCCTACCGTGTGGACTCCAGCAACTACAACCCGCAGCCCTTCTGGAAC
GCCGGCTGCCAAATGGTTGCCCTGAACTACCAGTCAGAGGGGCGGATGCTGCAGCTGAACCGAGCCAAGT
TCAGCGCCAACGGTGGCTGCGGCTACGTACTCAAGCCTGGGTGCATGTGCCAGGGCGTGTTCAACCCCAA
CTCGGAGGACCCCCTGCCCGGGCAGCTCAAGAAGCAGCTGGTGCTCCGGATCATCAGTGGCCAGCAGCTT
CCCAAGCCGCGCGACTCCATGCTGGGGGACCGTGGGGAGATCATCGACCCCTTTGTGGAGGTGGAGATCA
TTGGGCTCCCTGTGGACTGCAGCAGGGAGCAGACCCGCGTGGTGGACGACAACGGGTTCAACCCCACCTG
GGAGGAGACCCTGGTTTTCATGGTGCACATGCCGGAGATCGCGCTGGTCCGCTTCCTCGTCTGGGACCAC
GATCCCATCGGGCGTGACTTCATTGGCCAGAGGACGCTGGCCTTCAGCAGCATGATGCCAGGCTACAGAC
ACGTGTACCTAGAAGGGATGGAAGAGGCCTCCATCTTCGTGCATGTGGCTGTCAGTGACATCAGCGGTAA
GGTCAAGCAGGCTCTGGGCCTAAAAGGCCTCTTCCTCCGAGGCCCAAAGCCCGGCTCGCTGGACAGTCAT
GCTGCTGGGCGGCCCCCGGCCCGGCCCTCCGTTAGCCAGCGGATCCTGCGGCGCACGGCCAGCGCCCCGA
CCAAGAGCCAGAAGCCGGGCCGCAGGGGCTTCCCGGAGCTGGTCCTGGGTACACGGGACACAGGCTCCAA
GGGGGTGGCAGACGATGTGGTGCCCCCCGGGCCCGGACCTGCTCCGGAAGCCCCAGCCCAGGAGGGGCCC
GGCAGCGGCAGCCCCCGAGACACCCGCCCCCTCTCCACGCAGCGGCCACTCCCCCCACTGTGCAGCCTGG
AAACCATCGCTGAGGAGCCCGCCCCAGGCCCTGGTCCCCCGCCACCAGCGGCTGTCCCCACCAGCTCTTC
TCAGGGACGGCCCCCATACCCCACAGGACCCGGAGCCAATGTGGCAAGCCCCCTAGAGGACACTGAGGAG
CCCCGAGACAGCAGGCCTCGGCCGTGCAACGGCGAGGGCGCCGGCGGGGCATACGAGAGGGCCCCCGGCA
GCCAGACGGACGGCAGGAGCCAGCCCCGGACCCTGGGCCACCTGCCCGTGATTAGAAGGGTGAAGAGTGA
GGGGCAGGTGCCCACGGAGCCCCTGGGAGGGTGGCGGCCCCTGGCCGCTCCCTTTCCAGCTCCTGCCGTG
TACTCCGATGCCACGGGCAGTGACCCGCTGTGGCAGCGGCTGGAGCCATGTGGCCACCGAGACAGCGTTT
CCTCCTCCTCCAGCATGTCATCCAGCGACACTGTCATTGACCTCTCCCTGCCCAGCCTGGGCCTGGGCCG
CAGCCGTGAGAACCTCGCTGGAGCCCACATGGGACGCCTGCCCCCCAGGCCCCACTCGGCTTCGGCTGCC
CGCCCAGACCTGCCACCTGTGACCAAGAGCAAATCCAACCCCAACCTTCGGGCTACAGGCCAGCGGCCTC
CCATACCTGACGAACTGCAGCCCAGGTCCCTGGCCCCAAGGATGGCTGGCCTCCCCTTCCGGCCTCCCTG
GGGCTGCCTTTCCCTGGTGGGCGTGCAGGACTGCCCCGTGGCTGCCAAGTCCAAGAGCCTGGGCGACCTC
ACTGCTGATGACTTTGCCCCTAGCTTTGAGGGCGGCTCCCGCAGACTGAGCCACAGCCTGGGCCTCCCGG
GAGGGACACGGCGGGTGTCGGGGCCAGGGGTGAGACGGGACACCCTGACAGAGCAGCTGCGCTGGCTCAC
TGTCTTCCAGCAGGCAGGAGACATCACGTCACCCACCAGCCTGGGCCCGGCTGGGGAGGGGGTGGCAGGG
GGCCCTGGTTTTGTGCGGCGCTCCTCCTCCCGCAGCCACAGCCGCGTGCGTGCCATTGCCAGCCGGGCCC
GCCAGGCCCAGGAGCGGCAGCAGAGACTGCAGGGCCTGGGCCGGCAGGGACCCCCAGAAGAGGAGCGGGG
CACCCCCGAGGGCGCCTGCTCCGTGGGCCACGAGGGCAGTGTGGATGCACCAGCACCCTCCAAGGGAGCC
CTCGGGCCAGCATCCGCGGCTGCTGAAAACCTGGTCCTGCTCCGCCTCTGA

Translation (1416 aa):
MSGPWPSPDSRTKGTVAWLAEVLLWVGGSVVLSSEWQLGPLVERCMGAMQEGMQMVKLRGGSKGLVRFYY
LDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQSEVFQRYPDGSFDPNCCFSIYHGSHRESLDLVSTSS
EVARTWVTGLRYLMAGISDEDSLARRQRTRDQWLKQTFDEADKNGDGSLSIGEVLQLLHKLNVNLPRQRV
KQMFREADTDDHQGTLGFEEFCAFYKMMSTRRDLYLLMLTYSNHKDHLDAASLQRFLQVEQKMAGVTLES
CQDIIEQFEPCPENKSKGLLGIDGFTNYTRSPAGDIFNPEHHHVHQDMTQPLSHYFITSSHNTYLVGDQL
MSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIE
NHCSVIQQKKMAQYLTDILGDKLDLSSVSSEDATTLPSPQMLKGKILVKGKKLPANISEDAEEGEVSDED
SADEIDDDCKLLNGDASTNRKRVENTAKRKLDSLIKESKIRDCEDPNNFSVSTLSPSGKLGRKSKAEEDV
ESGEDAGASRRNGRLVVGSFSRRKKKGSKLKKAASVEEGDEGQDSPGGQSRGATRQKKTMKLSRALSDLV
KYTKSVATHDIEMEAASSWQVSSFSETKAHQILQQKPAQYLRFNQQQLSRIYPSSYRVDSSNYNPQPFWN
AGCQMVALNYQSEGRMLQLNRAKFSANGGCGYVLKPGCMCQGVFNPNSEDPLPGQLKKQLVLRIISGQQL
PKPRDSMLGDRGEIIDPFVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALVRFLVWDH
DPIGRDFIGQRTLAFSSMMPGYRHVYLEGMEEASIFVHVAVSDISGKVKQALGLKGLFLRGPKPGSLDSH
AAGRPPARPSVSQRILRRTASAPTKSQKPGRRGFPELVLGTRDTGSKGVADDVVPPGPGPAPEAPAQEGP
GSGSPRDTRPLSTQRPLPPLCSLETIAEEPAPGPGPPPPAAVPTSSSQGRPPYPTGPGANVASPLEDTEE
PRDSRPRPCNGEGAGGAYERAPGSQTDGRSQPRTLGHLPVIRRVKSEGQVPTEPLGGWRPLAAPFPAPAV
YSDATGSDPLWQRLEPCGHRDSVSSSSSMSSSDTVIDLSLPSLGLGRSRENLAGAHMGRLPPRPHSASAA
RPDLPPVTKSKSNPNLRATGQRPPIPDELQPRSLAPRMAGLPFRPPWGCLSLVGVQDCPVAAKSKSLGDL
TADDFAPSFEGGSRRLSHSLGLPGGTRRVSGPGVRRDTLTEQLRWLTVFQQAGDITSPTSLGPAGEGVAG
GPGFVRRSSSRSHSRVRAIASRARQAQERQQRLQGLGRQGPPEEERGTPEGACSVGHEGSVDAPAPSKGA
LGPASAAAENLVLLRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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