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Report for CCDS59487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59487.1 Public Homo sapiens 5 MARCHF6 24 110 108 CCDS HistoryNCBI Gene:10299Re-query CCDS DB by CCDS ID:59487.1Re-query CCDS DB by GeneID:10299See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449913.6 ENSP00000414643.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449913.6Link to Ensembl Protein Viewer:ENSP00000414643.2Re-query CCDS DB by Nucleotide ID:ENST00000449913Re-query CCDS DB by Protein ID:ENSP00000414643
Original member Current member NCBI NM_001270660.2 NP_001257589.1 Accepted alive Link to Nucleotide Sequence:NM_001270660.2Link to Protein Sequence:NP_001257589.1Re-query CCDS DB by Nucleotide ID:NM_001270660Re-query CCDS DB by Protein ID:NP_001257589Link to BLAST:NP_001257589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257589.1 862 O60337-5 862 100% 0 0

Chromosomal Locations for CCDS 59487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10353899 10353917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10377798 10377894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10378759 10378832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10386994 10387066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10390332 10390500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10391542 10391731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10394082 10394143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10394753 10394785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10397293 10397344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10400784 10400842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10402059 10402139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10402384 10402452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10402533 10402607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10403407 10403541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10405558 10405677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10407102 10407202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10410139 10410276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10411333 10411537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10414433 10414502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10415488 10415669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10417270 10417404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10423735 10423824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10426390 10426522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10429893 10430028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10433594 10433684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGGACACCGCGGAGGAAGACATATGTAGAGTGTGTCGGTCAGAAGGAACACCTGAGAAACCGCTTTATC
ATCCTTGTGTATGTACTGGCAGTATTAAGTTTATCCATCAAGAATGCTTAGTTCAATGGCTGAAACACAG
TCGAAAAGAATACTGTGAATTATGCAAGCACAGATTTGCTTTTACACCAAGCCGCATCTACAAGTGCTTG
TTTACTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATGCTGTCAACGGAAAATTTGTTGGCAG
ATTGTTTGCAGGGTTGTTTTGTGGTGACGTGCACACTGTGTGCATTCATCAGCCTGGTGTGGTTGAGAGA
GCAGATAGTCCATGGGGGAGCACCAATTTGGTTGGAGCATGCTGCCCCACCGTTCAATGCTGCGGGGCAT
CACCAAAATGAGGCTCCAGCAGGAGGAAATGGTGCAGAAAATGTTGCTGCTGATCAGCCTGCTAACCCAC
CAGCTGAGAACGCAGTGGTGGGGGAAAACCCTGATGCCCAGGATGACCAGGCAGAAGAGGAGGAGGAGGA
CAATGAGGAGGAAGATGACGCTGGTGTGGAGGATGCGGCAGATGCTAATAACGGAGCCCAGGATGACATG
AATTGGAATGCTTTAGAATGGGACCGAGCTGCTGAAGAGCTTACATGGGAAAGAATGCTAGGACTTGATG
GATCACTAGTTTTTCTGGAACATGTCTTCTGGGTGGTATCTTTAAATACACTGTTCATTCTTGTTTTTGC
ATTTTGCCCTTACCATATTGGTCATTTCTCCCTTGTTGGTTTGGGATTTGAAGAACACGTCCAAGCATCT
CATTTTGAAGGCCTAATCACAACCATAGTTGGGTATATACTTTTAGCAATAACACTGATAATTTGTCATG
GCTTGGCAACTCTTGTGAAATTTCATAGATCTCGTCGCTTACTGGGAGTCTGCTATATTGTTGTTAAGGT
CTCTTTGTTAGTGGTGGTAGAAATTGGAGTATTCCCTCTCATTTGTGGTTGGTGGCTGGATATCTGTTCC
TTGGAAATGTTTGATGCTACTCTGAAAGATCGAGAACTGAGCTTTCAGTCGGCTCCAGGTACTACCATGT
TTCTGCATTGGCTAGTGGGAATGGTATATGTCTTCTACTTTGCCTCCTTCATTCTACTACTGAGAGAGGT
ACTTCGACCTGGTGTCCTGTGGTTTCTAAGGAATTTGAATGATCCAGATTTCAATCCAGTACAGGAAATG
ATCCATTTGCCAATATATAGGCATCTCCGAAGATTTATTTTGTCAGTGATTGTCTTTGGCTCCATTGTCC
TCCTGATGCTTTGGCTTCCTATACGTATAATTAAGAGTGTGCTGCCTAATTTTCTTCCATACAATGTCAT
GCTCTACAGTGATGCTCCAGTGAGTGAACTGTCCCTCGAGCTGCTTCTGCTTCAGGTTGTCTTGCCAGCA
TTACTCGAACAGGGACACACGAGGCAGTGGCTGAAGGGGCTGGTGCGAGCGTGGACTGTGACCGCCGGAT
ACTTGCTGGATCTTCATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGTGCAAATCAACAAGT
TAACAATAATCAGCATGCTCGAAATAACAACGCTATTCCTGTGGTGGGAGAAGGCCTTCATGCAGCCCAC
CAAGCCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTACCGCCGACCTTTAAATTTTCCACTCA
GGATATTTCTGTTGATTGTCTTCATGTGTATAACATTACTGATTGCCAGCCTCATCTGCCTTACTTTACC
AGTATTTGCTGGCCGTTGGTTAATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCTACACAGCT
GCTTGTGGTCTCTATGTTTGCTGGCTAACCATAAGGGCTGTGACGGTGATGGTGGCATGGATGCCTCAGG
GACGCAGAGTGATCTTCCAGAAGGTTAAAGAGTGGTCTCTCATGATCATGAAGACTTTGATAGTTGCGGT
GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGTTTGAGCTGGTCATTGTGGCTCCCCTGAGG
GTTCCCTTGGATCAGACTCCTCTTTTTTATCCATGGCAGGACTGGGCACTTGGAGTCCTGCATGCCAAAA
TCATTGCAGCTATAACATTGATGGGTCCTCAGTGGTGGTTGAAAACTGTAATTGAACAGGTTTACGCAAA
TGGCATCCGGAACATTGACCTTCACTATATTGTTCGTAAACTGGCAGCTCCCGTGATCTCTGTGCTGTTG
CTTTCCCTGTGTGTACCTTATGTCATAGCTTCTGGTGTTGTTCCTTTACTAGGTGTTACTGCGGAAATGC
AAAACTTAGTCCATCGGCGGATTTATCCATTTTTACTGATGGTCGTGGTATTGATGGCAATTTTGTCCTT
CCAAGTCCGCCAGTTTAAGCGCCTTTATGAACATATTAAAAATGACAAGTACCTTGTGGGTCAACGACTC
GTGAACTACGAACGGAAATCTGGCAAACAAGGCTCATCTCCACCACCTCCACAGTCATCCCAAGAATAA

Translation (862 aa):
MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPSRIYKCL
FTGSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGH
HQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQDDM
NWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHVQAS
HFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICS
LEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEM
IHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPA
LLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAH
QAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGRWLMSFWTGTAKIHELYTA
ACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLR
VPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLL
LSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRL
VNYERKSGKQGSSPPPPQSSQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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