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Report for CCDS58238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58238.1 Public Homo sapiens 12 ATF7 24 110 108 CCDS HistoryNCBI Gene:11016Re-query CCDS DB by CCDS ID:58238.1Re-query CCDS DB by GeneID:11016See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000548118.6 ENSP00000456858.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548118.6Link to Ensembl Protein Viewer:ENSP00000456858.1Re-query CCDS DB by Nucleotide ID:ENST00000548118Re-query CCDS DB by Protein ID:ENSP00000456858
Original member Current member EBI ENST00000591397.1 ENSP00000465192.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591397.1Link to Ensembl Protein Viewer:ENSP00000465192.1Re-query CCDS DB by Nucleotide ID:ENST00000591397Re-query CCDS DB by Protein ID:ENSP00000465192
Original member Current member NCBI NM_001206682.2 NP_001193611.1 Accepted alive Link to Nucleotide Sequence:NM_001206682.2Link to Protein Sequence:NP_001193611.1Re-query CCDS DB by Nucleotide ID:NM_001206682Re-query CCDS DB by Protein ID:NP_001193611Link to BLAST:NP_001193611.1
Original member Current member NCBI NM_001206683.1 NP_001193612.1 Accepted alive Link to Nucleotide Sequence:NM_001206683.1Link to Protein Sequence:NP_001193612.1Re-query CCDS DB by Nucleotide ID:NM_001206683Re-query CCDS DB by Protein ID:NP_001193612Link to BLAST:NP_001193612.1
Original member Current member NCBI NM_001366562.2 NP_001353491.1 Accepted alive Link to Nucleotide Sequence:NM_001366562.2Link to Protein Sequence:NP_001353491.1Re-query CCDS DB by Nucleotide ID:NM_001366562Re-query CCDS DB by Protein ID:NP_001353491Link to BLAST:NP_001353491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193611.1 117 P17544-5 117 100% 0 0
NP_001193612.1 117 P17544-5 117 100% 0 0
NP_001353491.1 117 P17544-5 117 100% 0 0

Chromosomal Locations for CCDS 58238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53543240 53543448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53552541 53552637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53600953 53601000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGGAGACGACAGACCGTTTGTGTGCAATGCCCCGGGCTGTGGACAGAGATTTACAAACGAGGACCACC
TGGCAGTTCATAAACACAAGCATGAGATGACATTGAAATTTGGCCCAGCCCGAACTGACTCAGTCATCAT
TGCAGATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAGGTGGGACTCTTCAATGAACTA
GCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAGAAAAAGGCAAGAAGCAGGACTG
TTGCCAAAAAACTGGTGGTATTCAGACCTAGGCTATTTTTATTGTGCTTTGGGATAATTTTCTTAATTGG
TTAA

Translation (117 aa):
MGDDRPFVCNAPGCGQRFTNEDHLAVHKHKHEMTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNEL
ASSFEHEFKKAADEDEKKARSRTVAKKLVVFRPRLFLLCFGIIFLIG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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