CCDS Report for Consensus CDS

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Report for CCDS58168.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
58168.1	Public	Homo sapiens	11	CNTN5	24	110	108

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58168.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000527185.5	ENSP00000433575.1		Accepted	alive
		NCBI	NM_001243271.2	NP_001230200.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001230200.1	911	O94779-4	911	100%	0	0

Chromosomal Locations for CCDS 58168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)

Genome Browser links:

Chromosome	Start	Stop
11	99556215	99556269
11	99819544	99819765
11	99844852	99844975
11	99845087	99845262
11	99916054	99916149
11	99956806	99957009
11	100002034	100002136
11	100061212	100061393
11	100070424	100070560
11	100071705	100071834
11	100074144	100074294
11	100191126	100191253
11	100193488	100193663
11	100224692	100224812
11	100255760	100255918
11	100271092	100271241
11	100297625	100297695
11	100299162	100299396
11	100308359	100308474

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGGCTTCCTCTTGGAAACTAATGCTGTTTCTGTCAGTCACCATGTGTCTTTCAGAGTATTCAAAATCTC TTCCTGGTCTCTCCACTTCATATGCTGCTTTGTTAAGAATTAAGAAGAGTTCATCTTCATCTCTCTTTGG TTCCAAAACCAGACCACGATACAGCAGCCCTTCATTAGGAACACTGAGTGCTTCTTCACCCAGCTGGCTA GGGGCAGCTCAGAATTATTATTCCCCCATCAATCTTTATCATTCCTCAGATGCCTTCAAACAAGATGAAA GTGTGGACTATGGGCCAGTTTTTGTGCAAGAACCAGATGATATTATTTTTCCAACTGATTCTGATGAAAA GAAGGTAGCATTGAATTGTGAAGTTCGTGGCAATCCAGTTCCCAGTTACAGATGGCTTCGAAATGGAACA GAAATAGATCTGGAAAGTGATTATCGCTACAGTTTGATAGATGGCACCTTCATTATAAGCAATCCAAGTG AAGCAAAGGATTCTGGTCATTATCAGTGTTTAGCAACCAACACTGTGGGGAGTATTCTTAGTAGAGAAGC TACACTGCAGTTTGCCTATCTGGGAAATTTTAGTGGCCGGACAAGAAGTGCAGTCTCTGTGAGGGAAGGC CAGGGTGTCGTTCTGATGTGCTCTCCTCCGCCACATTCACCAGAGATCATCTATAGCTGGGTATTTAATG AGTTCCCTTCCTTTGTGGCGGAAGACAGCCGGCGGTTCATCTCCCAGGAGACAGGCAACCTTTATATTTC TAAAGTCCAAACATCAGATGTTGGCAGCTATATTTGTCTGGTGAAAAACACAGTGACGAATGCTAGAGTC CTTAGTCCTCCAACGCCACTCACTCTGCGTAATGATGGTGTGATGGGAGAATATGAGCCGAAAATTGAGG TCCATTTTCCTTTCACGGTTACAGCTGCTAAAGGAACAACTGTTAAGATGGAATGCTTTGCACTTGGCAA CCCCGTTCCAACAATCACATGGATGAAGGTTAATGGTTATATTCCTAGTAAGGCACGTCTGCGGAAATCT CAGGCGGTGCTGGAAATACCGAATGTACAGCTGGATGATGCAGGCATTTATGAGTGCAGAGCTGAAAACT CACGTGGAAAAAATTCCTTTCGTGGACAATTACAAGTATACACCTACCCACACTGGGTAGAAAAACTGAA TGATACTCAGTTAGACAGTGGGAGCCCTCTCCGATGGGAATGTAAGGCTACTGGAAAACCCAGACCCACG TATCGTTGGCTGAAGAATGGAGTACCCCTCTCACCTCAGAGTAGGGTTGAGATGGTTAATGGAGTATTGA TGATCCACAATGTGAATCAATCAGATGCTGGAATGTATCAGTGTTTGGCTGAAAATAAGTATGGAGCCAT TTACGCTAGTGCTGAGCTGAAGATTCTAGCTTCAGCTCCCACTTTTGCACTGAATCAACTGAAGAAAACA ATAATTGTTACCAAAGACCAAGAAGTTGTCATAGAGTGCAAACCCCAAGGCTCTCCAAAACCAACCATCT CTTGGAAGAAAGGAGACAGAGCAGTTAGAGAAAACAAAAGAATAGCTATTCTTCCAGACGGGAGTCTACG GATCCTAAATGCTTCCAAATCAGACGAGGGAAAGTACGTTTGCCGAGGGGAAAACGTCTTTGGTTCTGCT GAAATTATAGCTTCGCTATCTGTAAAAGAACCTACAAGGATAGAACTTACTCCTAAAAGAACAGAATTGA CAGTGGGAGAAAGCATTGTCCTTAATTGCAAAGCAATTCACGATGCTAGTTTGGATGTCACTTTCTACTG GACTCTGAAAGGACAGCCTATTGATTTCGAGGAAGAGGGTGGACATTTTGAAAGCATCAGGGCCCAAGCA TCCTCTGCAGATTTAATGATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGA CCACAGCAGACAGTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGACCCCCAGGCCCACCTGGGATAGT AATTGTTGAGGAAATAACCGAAAGTACGGCCACACTGTCCTGGAGCCCAGCAGCTGACAACCACAGCCCA ATCTCCTCCTACAACCTTCAAGCTCGCAGCCCATTTTCCCTGGGCTGGCAAACAGTAAAGACAGTCCCAG AAATCATAACAGGGGACATGGAGTCAGCCATGGCTGTGGACCTAAATCCCTGGGTGGAATATGAATTTCG AGTGGTAGCCACCAACCCTATTGGGACAGGAGATCCAAGCACCCCATCTCGAATGATCCGCACAAATGAA GCAGTTCCGAAGACAGCACCCACCAATGTAAGCGGAAGAAGTGGAAGAAGGCATGAGTTAGTCATTGCCT GGGAGCCAGTATCTGAAGAGTTTCAGAATGGGGAAGGCTTCGGCTATATTGTGGCTTTCAGACCCAATGG AACACGTGGCTGGAAGGAAAAAATGGTGACATCCTCTGAAGCTTCCAAATTCATTTATCGAGATGAAAGT GTCCCTCCTCTTACTCCCTTTGAAGTGAAAGTTGGCGTTTATAACAATAAAGGAGATGGGCCTTTTAGTC AAATTGTGGTCATCTGTTCAGCTGAAGGAGAACCCAGTGCTGCTCCCACAGATGTCAAGGCGACAAGTGT GTCTGTGTCAGAGATTCTTGTTGCATGGAAACACATTAAAGAGAGTCTAGGAAGACCACAGGGATTTGAG GTATGA
Translation (911 aa):
MASSWKLMLFLSVTMCLSEYSKSLPGLSTSYAALLRIKKSSSSSLFGSKTRPRYSSPSLGTLSASSPSWL GAAQNYYSPINLYHSSDAFKQDESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGT EIDLESDYRYSLIDGTFIISNPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREG QGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARV LSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKVNGYIPSKARLRKS QAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPT YRWLKNGVPLSPQSRVEMVNGVLMIHNVNQSDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKT IIVTKDQEVVIECKPQGSPKPTISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSA EIIASLSVKEPTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFESIRAQA SSADLMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGIVIVEEITESTATLSWSPAADNHSP ISSYNLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSTPSRMIRTNE AVPKTAPTNVSGRSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDES VPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFE V

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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