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Report for CCDS57482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57482.1 Public Mus musculus 7 Vmn2r41 23 108 98 CCDS HistoryNCBI Gene:100042848Re-query CCDS DB by CCDS ID:57482.1Re-query CCDS DB by GeneID:100042848See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168807.2 ENSMUSP00000128337.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168807.2Link to Ensembl Protein Viewer:ENSMUSP00000128337.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168807Re-query CCDS DB by Protein ID:ENSMUSP00000128337
Original member Current member NCBI NM_001105073.1 NP_001098543.1 Accepted alive Link to Nucleotide Sequence:NM_001105073.1Link to Protein Sequence:NP_001098543.1Re-query CCDS DB by Nucleotide ID:NM_001105073Re-query CCDS DB by Protein ID:NP_001098543Link to BLAST:NP_001098543.1

Chromosomal Locations for CCDS 57482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 8137905 8138809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8142804 8142927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8148742 8148969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8150217 8151029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8158241 8158532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8161355 8161551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGTTCATTTTCATGAGAGTCTTCCTCCTCCTTAATATTACACTTCTCATGGCCAATTTCATTGGTCCCA
GG
TGCTTTTGGAGAATAAATTTGGATGAAATAATGGATGAATATTTGGGATTAAGTTGTGCTTTCATCCT
G
GCAGCAGTTCAGACACCCACTGAAAAAGATTATTTCAACAAGACTCTTAATTTTCTAAAAACAACTACA
AAC
CACAAATATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAA
AT
ATGTCTTTGATTATAAGATACGCTTTGGGCCATTGTGATGGAAAAACTGTAACACCTACACCATATTT
A
TTTCATAAAAGAAAAAAAAGCCCTATCCCTAATTATTTCTGTAATGAAGAGAGTATGTGCTCCTTTCTG
ATT
TCAGGACCCAATTGGAAGGTATCTTTAAGTTTCTGGGATTACCTGGACAGCTTCTTATCTCCACGTA
TC
CTTCAGCTTACCTATGGACCTTTCAGTTCCATCTTCAGTGATGATGAACAATATCCCTATCTCTATCA
G
ATGGCCCCAAAGGACACATCTCTAGCATTGGCAATGGTCTCCTTCATACATTACTTCAACTGGAATTGG
ATT
GGCCTTGTCATCCCAGATGATGATCAAGGAAACCAATTTCTTTTAGAGTTGAAGAAACAGAGTGAAA
AC
AAGGAAATTTGCTTTGCCTTTGTGAAAATGATCTCTGTTGATGATGTTTCATTTCCACAAAATACTGA
A
ATGTACTACAACCAAATTGTGATGTCATCCACAAATGTTATTATCATTTATGGAGAAACATACAATTTC
ATT
GATTTGATCTTCAGAATGTGGGAACCTCCCATTTTACAGAGAATATGGATCACCACAAAACAATTGA
AT
TTCCCTACCAGGAAAAAAGACATAAGTCATGGCACATTCTATGGATCACTTACTTTTCTACCCCACCA
T
GGTGAGATTTCTGGCTTTAAAAATTTTGTACAGACATGGTTCCATCTCAGAAACACAGATTTATATCTA
CTA
ATGCAAGAGTGGAAATATTTTAACTATGTAAGCTCAGCATCCAATTGTAAAATACTGAAGAACAATT
CA
TCTGATGCCTCATTTAATTGGCTAATGGAACAGAAGTTTGACATGACCTTTAGTGAGAATAGTCATAA
C
ATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACATGCTGATAATCAG
GCA
ATAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTAAGAAGGGCCTACT
TC
ACTAATCCTCTTGGGGACAAAGTGTTTATGAAGCAAAGAGTAATAATGCAGGATGAATATGACATTAT
T
CACTTTGGGAATCTCTCACAACACCTTGAGATTAAGATGAAGTTAGGAAAGTTCAGCCCATATTTACCA
CAT
GGTCGACACTCTCACTTATATGTAGACATGATTGAGTTGGCCACAGGAAGAAGAAAGATGCCATCCT
CT
GTGTGCAGTGCGGAATGTAGTCCTGGATTCAGAAGATTATGGAAGGAGGGAATGGCAGCCTGCTGTTT
T
GTTTGCAGCCCCTGCCCAGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGCATGAATTGTCCA
GAA
TACCAATATGCCAACACTGAACAGAACAAATGTATTCAGAAAGGTGTCACCTTTCTAAGCTATGAAA
AC
CCCTTGGGAATGGCACTTGCCTTAATGGCCTTCTGTTTCTCTGCATTCACAGCTCTGGTACTTTGTGT
C
TTTGTGAAGCACCATGACACTCCTATTGTGAAGGCCAATAACAGAAGCCTCAGCTACCTATTACTCATG
TCA
CTCATGTTCTGTTTTCTGTGCTCCTTTTTCTTCATTGGCCTTCCAAACAGAGCCATTTGTGTCTTAC
AG
CAGATCACATTTGGAATTGTATTCACTGTGGCTGTTTCCACAGTTCTGGCCAAAACAGTCATTGTGGT
T
CTGGCTTTCAAAGTCACAGACCCAGGAAGAAGATTGAGAAACTTCCTGGTATCAGGGACACCCAACTAC
ATT
ATTCCTATATGTTCCCTACTCCAATGTGTTTTGTGTGCTATCTGGCTAGCAGTTTCTCCTCCCTTTG
TT
GATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGATACTGCATT
C
TACTGTATCCTGGGATATTTGGCCTGCATGGCACTTGGAAGCTTCTCTCTGGCTTTCTTGGCCAAGAAT
CTG
CCTGACACATTCAATGAAGCCAAGTTCTTGACCTTCAGCATGCTAGTGTTCTGCAGTGTCTGGGTCA
CC
TTCCTCCCTGTCTACCATAGCACCAAGGGCAAACACATGGTTGCTGTGGAGATCTTCTCCATCTTGGC
A
TCCAGTGCAGGGATCCTTGGGTGTATATTTGTACCCAAGATTTATATCATTTTAATGCGACCAGAGAGA
AAT
TCTACCCAAAAGATCAGGGAAAAATCATATTTCTGA


Translation (852 aa):
MFIFMRVFLLLNITLLMANFIGPRCFWRINLDEIMDEYLGLSCAFILAAVQTPTEKDYFNKTLNFLKTTT
N
HKYALALVFAMDEINRNPDLLPNMSLIIRYALGHCDGKTVTPTPYLFHKRKKSPIPNYFCNEESMCSFL
I
SGPNWKVSLSFWDYLDSFLSPR
ILQLTYGPFSSIFSDDEQYPYLYQMAPKDTSLALAMVSFIHYFNWNW
I
GLVIPDDDQGNQFLLELKKQSENKEICFAFVKMISVDDVSFPQNTEMYYNQIVMSSTNVIIIYGETYNF
I
DLIFRMWEPPILQRIWITTKQLNFPTRKKDISHGTFYGSLTFLPHHGEISGFKNFVQTWFHLRNTDLYL
L
MQEWKYFNYVSSASNCKILKNNSSDASFNWLMEQKFDMTFSENSHNIYNAVHAIAHALHEMNLQHADNQ
A
IDNGKGASSHCLK
VNSFLRRAYFTNPLGDKVFMKQRVIMQDEYDIIHFGNLSQHLEIKMKLGKFSPYLP
H
GRHSHLYVDMIELATGRRK
MPSSVCSAECSPGFRRLWKEGMAACCFVCSPCPENEISNETNMDQCMNCP
E
YQYANTEQNKCIQKGVTFLSYENPLGMALALMAFCFSAFTALVLCVFVKHHDTPIVKANNRSLSYLLLM
S
LMFCFLCSFFFIGLPNRAICVLQQITFGIVFTVAVSTVLAKTVIVVLAFKVTDPGRRLRNFLVSGTPNY
I
IPICSLLQCVLCAIWLAVSPPFVDIDEHTLHGHIIIVCNKGSDTAFYCILGYLACMALGSFSLAFLAKN
L
PDTFNEAKFLTFSMLVFCSVWVTFLPVYHSTKGKHMVAVEIFSILASSAGILGCIFVPKIYIILMRPER
N
STQKIREKSYF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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