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Report for CCDS574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
574.1 Public Homo sapiens 1 SLC1A7 24 110 108 CCDS HistoryNCBI Gene:6512Re-query CCDS DB by CCDS ID:574.1Re-query CCDS DB by GeneID:6512See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 574.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371494.9 ENSP00000360549.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371494.9Link to Ensembl Protein Viewer:ENSP00000360549.5Re-query CCDS DB by Nucleotide ID:ENST00000371494Re-query CCDS DB by Protein ID:ENSP00000360549
Original member Current member NCBI NM_006671.6 NP_006662.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006671.6Link to Protein Sequence:NP_006662.3Re-query CCDS DB by Nucleotide ID:NM_006671Re-query CCDS DB by Protein ID:NP_006662Link to BLAST:NP_006662.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006662.3 560 O00341-1 560 100% 0 0

Chromosomal Locations for CCDS 574.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53088009 53088227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53088877 53088979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53089800 53089934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53090612 53090806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53092554 53092787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53093461 53093560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53103346 53103568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53105732 53105774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53114758 53114973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53134350 53134429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53142315 53142449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGTGCCGCATGCCATCTTGGCACGGGGGAGGGACGTGTGCAGGCGGAATGGACTCCTCATCCTGTCTG
TGCTGTCTGTCATCGTGGGCTGCCTCCTCGGCTTCTTCTTGAGGACCCGGCGCCTCTCACCACAGGAAAT
TAGTTACTTCCAGTTCCCTGGAGAGCTCCTGATGAGGATGCTGAAGATGATGATCCTGCCACTGGTGGTC
TCCAGCTTGATGTCCGGACTTGCCTCCCTGGATGCCAAGACCTCTAGCCGCCTGGGCGTCCTCACCGTGG
CGTACTACCTGTGGACCACCTTCATGGCTGTCATCGTGGGCATCTTCATGGTCTCCATCATCCACCCAGG
CAGCGCGGCCCAGAAGGAGACCACGGAGCAGAGTGGGAAGCCCATCATGAGCTCAGCCGATGCCCTGTTG
GACCTCATCCGGAACATGTTCCCAGCCAACCTAGTAGAAGCCACATTCAAACAGTACCGCACCAAGACCA
CCCCAGTTGTCAAGTCCCCCAAGGTGGCACCAGAGGAGGCCCCTCCTCGGCGGATCCTCATCTACGGGGT
CCAGGAGGAGAATGGCTCCCATGTGCAGAACTTCGCCCTGGACCTGACCCCGCCGCCCGAGGTCGTTTAC
AAGTCAGAGCCGGGCACCAGCGATGGCATGAATGTGCTGGGCATCGTCTTCTTCTCTGCCACCATGGGCA
TCATGCTGGGCCGCATGGGTGACAGCGGGGCCCCCCTGGTCAGCTTCTGCCAGTGCCTCAATGAGTCGGT
CATGAAGATCGTGGCGGTGGCTGTGTGGTATTTCCCCTTCGGCATTGTGTTCCTCATTGCGGGTAAGATC
CTGGAGATGGACGACCCCAGGGCCGTCGGCAAGAAGCTGGGCTTCTACTCAGTCACCGTGGTGTGCGGGC
TGGTGCTCCACGGGCTCTTTATCCTGCCCCTGCTCTACTTCTTCATCACCAAGAAGAATCCCATCGTCTT
CATCCGTGGCATCCTGCAGGCTCTGCTCATCGCGCTGGCCACCTCCTCCAGCTCAGCCACACTGCCCATC
ACCTTCAAGTGCCTGCTGGAGAACAACCACATCGACCGGCGCATCGCTCGCTTCGTGCTGCCCGTGGGTG
CCACCATCAACATGGACGGCACTGCGCTCTACGAGGCTGTGGCCGCCATCTTCATCGCCCAGGTCAACAA
CTACGAGCTGGACTTTGGCCAGATCATCACCATCAGTATCACAGCCACTGCAGCCAGCATTGGGGCAGCT
GGCATCCCCCAGGCCGGCCTCGTCACCATGGTCATCGTGCTCACCTCCGTGGGACTGCCCACCGATGACA
TCACCCTCATCATTGCCGTTGACTGGGCTCTGGACCGTTTCCGCACCATGATTAACGTGCTGGGTGATGC
GCTGGCAGCGGGGATCATGGCCCATATATGTCGGAAGGATTTTGCCCGGGACACAGGCACCGAGAAACTG
CTGCCCTGCGAGACCAAGCCAGTGAGCCTCCAGGAGATCGTGGCAGCCCAGCAGAATGGCTGTGTGAAGA
GTGTAGCCGAGGCCTCCGAGCTCACCCTGGGCCCCACCTGCCCCCACCACGTCCCCGTTCAAGTGGAGCA
GGATGAGGAGCTGCCCGCTGCGAGTCTGAACCACTGCACCATCCAGATCAGTGAGCTGGAGACCAATGTC
TGA

Translation (560 aa):
MVPHAILARGRDVCRRNGLLILSVLSVIVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMMILPLVV
SSLMSGLASLDAKTSSRLGVLTVAYYLWTTFMAVIVGIFMVSIIHPGSAAQKETTEQSGKPIMSSADALL
DLIRNMFPANLVEATFKQYRTKTTPVVKSPKVAPEEAPPRRILIYGVQEENGSHVQNFALDLTPPPEVVY
KSEPGTSDGMNVLGIVFFSATMGIMLGRMGDSGAPLVSFCQCLNESVMKIVAVAVWYFPFGIVFLIAGKI
LEMDDPRAVGKKLGFYSVTVVCGLVLHGLFILPLLYFFITKKNPIVFIRGILQALLIALATSSSSATLPI
TFKCLLENNHIDRRIARFVLPVGATINMDGTALYEAVAAIFIAQVNNYELDFGQIITISITATAASIGAA
GIPQAGLVTMVIVLTSVGLPTDDITLIIAVDWALDRFRTMINVLGDALAAGIMAHICRKDFARDTGTEKL
LPCETKPVSLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPVQVEQDEELPAASLNHCTIQISELETNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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