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Report for CCDS57172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57172.1 Public Mus musculus 2 Slc4a10 23 108 98 CCDS HistoryNCBI Gene:94229Re-query CCDS DB by CCDS ID:57172.1Re-query CCDS DB by GeneID:94229See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112480.2 ENSMUSP00000108099.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112480.2Link to Ensembl Protein Viewer:ENSMUSP00000108099.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112480Re-query CCDS DB by Protein ID:ENSMUSP00000108099
Original member NCBI NM_001242380.1 NP_001229309.1 Updated not alive Link to Nucleotide Sequence:NM_001242380.1Link to Protein Sequence:NP_001229309.1Re-query CCDS DB by Nucleotide ID:NM_001242380Re-query CCDS DB by Protein ID:NP_001229309
Current member NCBI NM_001242380.2 NP_001229309.1 Accepted alive Link to Nucleotide Sequence:NM_001242380.2Link to Protein Sequence:NP_001229309.1Re-query CCDS DB by Nucleotide ID:NM_001242380Re-query CCDS DB by Protein ID:NP_001229309Link to BLAST:NP_001229309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229309.1 1118 Q5DTL9-1 1118 100% 0 0

Chromosomal Locations for CCDS 57172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 62046645 62046692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62158206 62158287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62190740 62190886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62211355 62211493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62228567 62228727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62234381 62234569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62243362 62243453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62244352 62244441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62250379 62250536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62253311 62253398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62257459 62257605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62263953 62264053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62267401 62267575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62268141 62268274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62268661 62268906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62281874 62281979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62286802 62286963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62288708 62288821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62289910 62290071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62296756 62297007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62298152 62298220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62303804 62303977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62304653 62304775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62313282 62313349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62316565 62316681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62317476 62317488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3357 nt):
ATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACGAGAAATGATGAAGAAGCCGTTG
TGGATAGAGGTGGAACACGCTCTATTCTCAAAACACATTTTGAGAAAGAAGATTTAGAAGGTCATCGGAC
ATTATTTATTGGAGTTCATGTGCCCCTGGGTGGAAGAAAAAGCCATCGTCGTCACAGGCATCGTGGTCAT
AAGCACAGAAAGAGGGACAGAGAGAGAGATTCGGGACTGGAGGATGGAAGAGAGTCCCCTTCTTTTGACA
CCCCATCGCAGAGGGTGCAGTTTATTCTTGGAACTGAGGACGATGATGAGGAGCACCTCCCTCATGACCT
TTTCACAGAGCTGGATGAGATTTGCTGGCGTGAAGGGGAAGATGCTGAGTGGCGAGAGACAGCCAGGTGG
TTGAAATTTGAAGAGGATGTGGAAGATGGAGGAGAAAGATGGAGTAAGCCCTATGTGGCCACGCTTTCAT
TACACAGCTTGTTTGAGTTGAGAAGCTGCATCCTGAATGGAACTGTGCTACTGGACATGCATGCCAACAC
GATAGAAGAAATTGCAGATATGGTCCTTGACCAGCAGGTCAGCTCAGGCCAGCTGAATGAAGATGTTCGC
CACAGGGTCCACGAAGCATTGATGAAGCAGCATCATCACCAGAATCAGAAAAAACTGGCTAACAGGATTC
CTATTGTCCGATCTTTTGCTGATATTGGCAAGAAACAATCAGAACCAAATTCCATGGATAAAAATGCAGG
TCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAGAATAAAAATGATGTCAGCAGGGAAAACAGC
ACTGTAGACTTCAGCAAGGGACTGGGAGGCCAACAAAAGGGGCATACTAGTCCATGTGGGATGAAACAAA
GGCTTGACAAAGGACCTCCACACCAGCAGGAGAGAGAGGTTGATCTGCATTTTATGAAAAAGATTCCTCC
GGGTGCTGAAGCTTCAAACATCTTGGTAGGAGAACTGGAGTTCCTAGACAGAACTGTGGTTGCCTTTGTC
AGGTTGTCTCCAGCTGTCTTGCTCCAAGGACTTGCTGAAGTTCCAATCCCAAGCAGATTTCTGTTCATCC
TTCTGGGACCCCTGGGAAAGGGTCAACAGTACCACGAGATTGGCAGATCGATTGCGACCTTAATGACTGA
TGAGGTGTTTCATGATGTTGCTTACAAAGCTAAAGACCGCAATGACTTGGTATCAGGAATTGATGAGTTT
CTGGATCAGGTTACCGTTCTTCCTCCTGGAGAATGGGATCCAAGCATACGAATAGAACCTCCCAAAAATG
TCCCTTCCCAGGAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGCGAAGCTGAGCC
ACATGGAGGACACAGCGGACCTGAACTCCAGCGAACTGGGAGGATTTTTGGGGGACTTATATTAGATATC
AAAAGAAAGGCTCCATTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCGTTCC
TGTTTCTCTACTGTGCATGCATGTCTCCTGTCATCACATTTGGAGGACTGTTGGGAGAAGCAACTGAAGG
TCGTATAAGTGCAATCGAATCACTCTTTGGAGCATCTATGACCGGGATAGCCTATTCTCTTTTTGGTGGA
CAGCCCCTGACCATATTAGGCAGCACAGGACCTGTTTTGGTGTTTGAAAAGATCTTGTTTAAGTTTTGCA
AGGAATACGGCCTGTCGTACTTGTCCTTACGGGCCAGCATTGGGCTCTGGACTGCAACACTGTGCATCAT
CCTTGTGGCCACGGACGCGAGCTCACTCGTCTGCTACATCACCCGGTTTACCGAAGAGGCTTTTGCTTCT
CTCATTTGCATCATTTTTATCTATGAAGCCCTGGAGAAGTTGTTTGAGCTCAGTGAAACCTATCCAATCA
ATATGCACAATGATTTGGAACTGCTGACACAATACTCATGTAACTGTATGGAGCCACATAGTCCCAGCAA
TGACACACTGAAGGAATGGCGGGAGTCCAACCTTTCTGCCTCTGACATAATCTGGGGGAACCTAACTGTG
TCAGAGTGCAGATCACTGCACGGGGAGTATGTCGGGCGAGCCTGTGGCCATGGCCACCCCTACGTGCCAG
ATGTTCTCTTCTGGTCGGTGATCCTGTTCTTCTCCACAGTTACCATGTCAGCCACCCTGAAGCAGTTCAA
GACCAGCCGCTATTTCCCAACCAAGGTTCGATCCATAGTGAGTGATTTTGCGGTTTTTCTTACAATTCTG
TGTATGGTTTTAATTGACTATGCCATTGGGATCCCATCACCAAAACTACAAGTACCAAGCGTTTTCAAGC
CGACCAGAGACGACCGTGGCTGGTTTGTTACACCTTTGGGTCCAAACCCATGGTGGACAATCATAGCTGC
CATCATCCCAGCTTTACTCTGTACTATTCTGATTTTCATGGACCAGCAGATTACAGCTGTCATCATCAAC
AGAAAAGAGCACAAGCTAAAGAAAGGTTGTGGCTATCACCTGGATCTGTTAATGGTGGCAGTCATGCTCG
GGGTCTGCTCCATTATGGGCCTGCCATGGTTTGTGGCTGCCACAGTTCTCTCCATCACTCATGTCAACAG
CCTCAAGCTCGAATCAGAGTGCTCTGCTCCAGGAGAACAACCCAAGTTTCTCGGCATTCGGGAGCAGAGG
GTGACCGGGCTCATGATTTTTATTCTTATGGGTTCATCCGTTTTCATGACCAGCATTCTGAAGTTTATCC
CCATGCCAGTGTTATACGGAGTGTTTCTTTATATGGGTGCTTCGTCTCTCAAAGGAATTCAGTTATTTGA
TAGAATAAAGCTCTTCTGGATGCCAGCCAAACATCAACCAGATTTCATCTATCTAAGGCACGTGCCCCTC
CGGAAAGTCCATCTCTTCACAGTCATTCAGATGAGTTGTCTCGGCCTTCTGTGGATAATCAAAGTTTCGA
GAGCTGCTATTGTCTTTCCTATGATGGTGTTGGCACTAGTGTTTGTGAGAAAGTTGATGGACTTCTTGTT
TACCAAACGGGAACTCAGCTGGCTTGATGATTTAATGCCTGAGAGTAAAAAGAAGAAACTTGAAGATGCT
GAGAAAGAAGAAGAACAAAGTATGCTAGCCATGGAGGACGAGGGCACAGTACAACTCCCACTGGAGGGAC
ACTACAGAGACGACCCGTCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCT
TCTAGTTACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAGCTCCCCTTCCTAA

Translation (1118 aa):
MEIKDQGAQMEPLLPTRNDEEAVVDRGGTRSILKTHFEKEDLEGHRTLFIGVHVPLGGRKSHRRHRHRGH
KHRKRDRERDSGLEDGRESPSFDTPSQRVQFILGTEDDDEEHLPHDLFTELDEICWREGEDAEWRETARW
LKFEEDVEDGGERWSKPYVATLSLHSLFELRSCILNGTVLLDMHANTIEEIADMVLDQQVSSGQLNEDVR
HRVHEALMKQHHHQNQKKLANRIPIVRSFADIGKKQSEPNSMDKNAGQVVSPQSAPACAENKNDVSRENS
TVDFSKGLGGQQKGHTSPCGMKQRLDKGPPHQQEREVDLHFMKKIPPGAEASNILVGELEFLDRTVVAFV
RLSPAVLLQGLAEVPIPSRFLFILLGPLGKGQQYHEIGRSIATLMTDEVFHDVAYKAKDRNDLVSGIDEF
LDQVTVLPPGEWDPSIRIEPPKNVPSQEKRKIPAVPNGTAAHGEAEPHGGHSGPELQRTGRIFGGLILDI
KRKAPFFWSDFRDAFSLQCLASFLFLYCACMSPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFGG
QPLTILGSTGPVLVFEKILFKFCKEYGLSYLSLRASIGLWTATLCIILVATDASSLVCYITRFTEEAFAS
LICIIFIYEALEKLFELSETYPINMHNDLELLTQYSCNCMEPHSPSNDTLKEWRESNLSASDIIWGNLTV
SECRSLHGEYVGRACGHGHPYVPDVLFWSVILFFSTVTMSATLKQFKTSRYFPTKVRSIVSDFAVFLTIL
CMVLIDYAIGIPSPKLQVPSVFKPTRDDRGWFVTPLGPNPWWTIIAAIIPALLCTILIFMDQQITAVIIN
RKEHKLKKGCGYHLDLLMVAVMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQR
VTGLMIFILMGSSVFMTSILKFIPMPVLYGVFLYMGASSLKGIQLFDRIKLFWMPAKHQPDFIYLRHVPL
RKVHLFTVIQMSCLGLLWIIKVSRAAIVFPMMVLALVFVRKLMDFLFTKRELSWLDDLMPESKKKKLEDA
EKEEEQSMLAMEDEGTVQLPLEGHYRDDPSVINISDEMSKTAMWGNLLVTADNSKEKESRFPSKSSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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