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Report for CCDS57046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57046.1 Public Mus musculus 17 Vmn2r99 23 108 98 CCDS HistoryNCBI Gene:665376Re-query CCDS DB by CCDS ID:57046.1Re-query CCDS DB by GeneID:665376See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176107.2 ENSMUSP00000135236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176107.2Link to Ensembl Protein Viewer:ENSMUSP00000135236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176107Re-query CCDS DB by Protein ID:ENSMUSP00000135236
Original member Current member NCBI NM_001104551.2 NP_001098021.2 Accepted alive Link to Nucleotide Sequence:NM_001104551.2Link to Protein Sequence:NP_001098021.2Re-query CCDS DB by Nucleotide ID:NM_001104551Re-query CCDS DB by Protein ID:NP_001098021Link to BLAST:NP_001098021.2

Chromosomal Locations for CCDS 57046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19362135 19362349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19377931 19378225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19378566 19379357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19380018 19380233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19382503 19382626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19393662 19394590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGTCGCTTGGATTTTTATCTTCTGGTTCATGCAAATAAACAAATGTGTCTCTGCTTTTACCTATATCA
GTAGTTGTTATTACAGAATCTCTGAAGAATTTCACCATGAAGGAGATGTTGTGATTGGTGCATTTTTCCC
ACTTCACACATTTCACACTAAGAAGGAAAAGCCACATTCAACTATCCCATACTACTATTTGGACAATAAA
ATACAGTATAACTTTAAGAACTACCAGTATATTCTTGCTCTGAATTTTGCCATTGAGGAGATCAATGGGA
ACCCCAGTCTTTTACCCAACATATCTCTTGGATTCGATTTCTACAATGTCAGATTCACTGGGAAGTACAT
TCATAGTAATACTTTCAATTGGCTCACAGCTCTTGGTTTGAGAAATTATTTACCTAATTACAATTGTAAA
AAGAGAAATTTCACTGCTGCACTGACAGGAACTTCTTGGATAACATCTGCTCTAACTGGGACATTGCTTC
AACTCTTTAAATTTCCACAGATTACTTTTGGACCATATGATTTTCACCTGAGTGACCGTGGTCAGTATCC
TTCTCTCTACCAGATGGCCCCCAAGGATATCTCTCTTTCACTTGCCATTGTTTCACTGGTGGTATATTTT
AATTGGTCATGGGTTGGCCTCATCCTCCCTGATGACCACAAAGGAAATATAATTCTATCAGATTTTAGTG
AGGAGATGGAGAGAAAAGGCATCTGCCTAGCTTTTGTAAAAATGACCCCCGCCACATGGACTTCATATTT
TGCCAAATTCTGGGAAAATATGGATGAGACAAATGTAACAATTATTTATGGTGACATTGATTCGCTAGAA
GGTGTAATGAGGAATATTGAGCAAAGGTTATTGACATGGAATGTCTGGATCATGAACATTGAACATCATA
TTATTGACATAGCTGATTATTTCATGTTAGACCCATTCCATGGAAGCCTAATTTTTAAGCACAATTATAG
AGAGAATTTTGAATTTACCAAATTTATTCAAACAGTTAATCCCAATAAATACCCAGAAGACATTTATCTT
CCTAAGCTGTGGCATTTGTTCTTCAAGTGCTCATTTTCTGACATTAATTGTCATGTGTTGGAAAACTGTC
AAACCAATGCTTCTTTGGATGTATTCCCTCGTCACATATTTGATGGGTCTATGAGTGATGAGAGTAGAAG
TATTTACAATGGTGTGTATACTGTTGCTCACAGTCTCCATGAGATGAGAATTCAGCAACTTCAAATGCAG
CCATATGAAAATGGTGAAGGGATGGTGTTCTTTCCATGGCAGCTTAACACCTTCCTGAAGGATATTGAAT
TGAAAGACAAAAGGAGTTTAGATTGGAGACAGACAATAGATACAGAGTATGACATTCTTAACATTTGGAA
TTTACCAAAGGGTCTTGGATTAAAAGTGAAAATAGGATCCTTTTCTGCAAATGCTCCCCAGGATCAGCAG
TTGTGTTTATCTGAACAGATGATCCAATGGCCAGAAATATTTTCAGAGATCCCTCAGTCTGTGTGCAGTG
AGAGTTGTGGACCTGGATTCAGGAAAGTAACCCAGGAGGGCAAGTCCATCTGCTGCTACAGGTGCACTCC
TTGTGCAGACAATGAGATTTCTAATGATACAGATGTAGACAAGTGTGTGAAGTGTCCAGAGAGACATTAT
GCAAATGCAGAGAAGAACAACTGCTTCCAAAAATCTGTGAGTTTTCTGGCCTATGAAGACCCCTTGGGGA
TGGCATTAGCAAGCATAGCTTTGTGCTTATCTGCACTAACTGCCTTTGTTATTGGCATCTTTGTGAAGCA
CAGAGACACTCCTATTGTTAAGGCAAATAATCGAGCTCTGAGTTATATTTTGCTCATCACACTCACCTTC
TGTTTCCTATGTTCTTTGAACTTCATTGGTCAGCCAAACACAGCTGCCTGCATCCTTCAGCAGACCACAT
TTGCAGTTGCTTTCACTATAGCTCTAGCTACTGTGTTGGCCAAAGCTATCACTGTTGTCCTTGCCTTTAA
GGTCAGTTTTCCAGGGAGAATGTTAAGGTGGCTAATGATATCAAGGGGTCCAAACTACATCATTCCTGTC
TGCACCCTGATCCAGCTTCTTATTTGTGGAATATGGATGGCAACGTCTCCACCATTCATTGACCAAGATC
CTCAAACAGAATATGGGCATATCATCATTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCAGTCCT
GGGATACCTCTGCTTCATGGCCCTCGGGAGTTATGCCATGGCCTTCTTATCTAGAAATTTGCCAGATACA
TTCAATGAATCCAAATTTCTGTCATTCAGTATGCTGGTGTTCTTCTGTGTCTGGGTCACCTTTCTTCCTG
TCTACCACAGCACTAAAGGGAAGGTCATGGTAGCCATGGAAGTATTCTCTATCTTGGCTTCCAGCACAGC
ACTCCTTGTCTTCATATTTGGTCCCAAGTGTTACATTATCTTGCTGAGACCAGATAAGAATTCATTTAAT
CACATCAGGAAGAAAACACTTTCTAGAAGGAAGAATTTTTCTAAAATATAG

Translation (856 aa):
MVAWIFIFWFMQINKCVSAFTYISSCYYRISEEFHHEGDVVIGAFFPLHTFHTKKEKPHSTIPYYYLDNK
IQYNFKNYQYILALNFAIEEINGNPSLLPNISLGFDFYNVRFTGKYIHSNTFNWLTALGLRNYLPNYNCK
KRNFTAALTGTSWITSALTGTLLQLFKFPQITFGPYDFHLSDRGQYPSLYQMAPKDISLSLAIVSLVVYF
NWSWVGLILPDDHKGNIILSDFSEEMERKGICLAFVKMTPATWTSYFAKFWENMDETNVTIIYGDIDSLE
GVMRNIEQRLLTWNVWIMNIEHHIIDIADYFMLDPFHGSLIFKHNYRENFEFTKFIQTVNPNKYPEDIYL
PKLWHLFFKCSFSDINCHVLENCQTNASLDVFPRHIFDGSMSDESRSIYNGVYTVAHSLHEMRIQQLQMQ
PYENGEGMVFFPWQLNTFLKDIELKDKRSLDWRQTIDTEYDILNIWNLPKGLGLKVKIGSFSANAPQDQQ
LCLSEQMIQWPEIFSEIPQSVCSESCGPGFRKVTQEGKSICCYRCTPCADNEISNDTDVDKCVKCPERHY
ANAEKNNCFQKSVSFLAYEDPLGMALASIALCLSALTAFVIGIFVKHRDTPIVKANNRALSYILLITLTF
CFLCSLNFIGQPNTAACILQQTTFAVAFTIALATVLAKAITVVLAFKVSFPGRMLRWLMISRGPNYIIPV
CTLIQLLICGIWMATSPPFIDQDPQTEYGHIIILCNKGSAVAFHSVLGYLCFMALGSYAMAFLSRNLPDT
FNESKFLSFSMLVFFCVWVTFLPVYHSTKGKVMVAMEVFSILASSTALLVFIFGPKCYIILLRPDKNSFN
HIRKKTLSRRKNFSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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