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Report for CCDS5695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5695.1 Public Homo sapiens 7 TSC22D4 24 110 108 CCDS HistoryNCBI Gene:81628Re-query CCDS DB by CCDS ID:5695.1Re-query CCDS DB by GeneID:81628See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5695.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300181.7 ENSP00000300181.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300181.7Link to Ensembl Protein Viewer:ENSP00000300181.2Re-query CCDS DB by Nucleotide ID:ENST00000300181Re-query CCDS DB by Protein ID:ENSP00000300181
Original member Current member NCBI NM_001303043.2 NP_001289972.1 Accepted alive Link to Nucleotide Sequence:NM_001303043.2Link to Protein Sequence:NP_001289972.1Re-query CCDS DB by Nucleotide ID:NM_001303043Re-query CCDS DB by Protein ID:NP_001289972Link to BLAST:NP_001289972.1
Original member Current member NCBI NM_030935.5 NP_112197.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030935.5Link to Protein Sequence:NP_112197.1Re-query CCDS DB by Nucleotide ID:NM_030935Re-query CCDS DB by Protein ID:NP_112197Link to BLAST:NP_112197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289972.1 395 Q9Y3Q8-1 395 100% 0 0
NP_112197.1 395 Q9Y3Q8-1 395 100% 0 0

Chromosomal Locations for CCDS 5695.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100466959 100467168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100467552 100467600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100474274 100474440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100477277 100478038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGAGCGGGGGCAAGAAGAAGAGTAGTTTCCAAATCACCAGCGTCACCACGGACTATGAGGGCCCTGGGA
GCCCAGGGGCTTCGGATCCCCCTACCCCACAGCCCCCAACCGGGCCCCCGCCCCGCCTGCCCAATGGGGA
GCCCAGCCCCGATCCGGGGGGCAAGGGCACCCCCCGGAATGGCTCCCCACCACCTGGGGCCCCTTCCTCC
CGTTTCCGGGTGGTGAAGCTGCCCCACGGCCTGGGAGAGCCTTATCGCCGCGGTCGCTGGACGTGTGTGG
ATGTTTATGAGCGAGACCTGGAGCCCCACAGCTTCGGCGGACTCCTGGAGGGAATTCGAGGGGCCTCAGG
GGGCGCCGGGGGCAGATCTTTGGATTCCAGGTTGGAGCTGGCCAGCCTCGGCCTGGGCGCCCCCACCCCA
CCGTCAGGCCTGTCTCAGGGCCCCACCTCCTGGCTCCGTCCACCCCCCACCTCTCCTGGACCTCAGGCCC
GCTCCTTCACTGGGGGACTGGGCCAGCTGGTGGTGCCCAGCAAAGCCAAGGCAGAGAAACCCCCACTGTC
GGCCTCCTCACCCCAGCAGCGCCCCCCAGAGCCTGAGACCGGTGAGAGTGCGGGCACATCCCGGGCTGCC
ACGCCCCTGCCCTCTCTGAGGGTGGAAGCGGAGGCTGGGGGCTCAGGGGCCAGGACCCCTCCACTGTCCC
GGAGGAAAGCTGTAGACATGCGGCTGCGGATGGAGTTGGGTGCTCCAGAAGAGATGGGGCAGGTGCCCCC
ACTTGACTCTCGCCCCAGCTCCCCAGCCCTCTACTTCACCCACGATGCCAGCCTGGTTCACAAATCTCCA
GACCCCTTCGGAGCAGTAGCAGCTCAGAAGTTCAGCCTGGCCCACTCCATGTTGGCCATCAGTGGTCACC
TAGACAGCGACGATGATAGTGGCTCCGGAAGCCTGGTTGGCATTGACAACAAAATCGAGCAAGCCATGGA
CTTGGTGAAGTCCCACCTCATGTTTGCGGTCCGGGAGGAGGTGGAGGTGCTGAAGGAGCAGATCCGGGAA
TTGGCGGAGCGGAACGCTGCGCTGGAGCAGGAGAATGGGCTGCTGCGCGCCCTGGCCAGCCCGGAGCAGC
TGGCTCAGCTGCCCTCCTCGGGGGTCCCACGGCTTGGGCCCCCTGCGCCCAATGGGCCCTCCGTCTGA

Translation (395 aa):
MSGGKKKSSFQITSVTTDYEGPGSPGASDPPTPQPPTGPPPRLPNGEPSPDPGGKGTPRNGSPPPGAPSS
RFRVVKLPHGLGEPYRRGRWTCVDVYERDLEPHSFGGLLEGIRGASGGAGGRSLDSRLELASLGLGAPTP
PSGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLVVPSKAKAEKPPLSASSPQQRPPEPETGESAGTSRAA
TPLPSLRVEAEAGGSGARTPPLSRRKAVDMRLRMELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHKSP
DPFGAVAAQKFSLAHSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRE
LAERNAALEQENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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