CCDS Report for Consensus CDS

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Report for CCDS56884.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
56884.1	Public	Mus musculus	13	Hk3	23	108	98

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56884.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000123097.7	ENSMUSP00000116717.1	Accepted	alive
		NCBI	NM_001206391.1	NP_001193320.1	Accepted	alive

Chromosomal Locations for CCDS 56884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)

Genome Browser links:

Chromosome	Start	Stop
13	55006171	55006315
13	55006403	55006636
13	55006806	55006961
13	55007072	55007255
13	55008675	55008774
13	55008953	55009048
13	55010697	55010816
13	55010896	55011035
13	55011148	55011308
13	55012027	55012260
13	55012442	55012597
13	55013228	55013411
13	55013487	55013586
13	55014232	55014327
13	55014427	55014546
13	55014626	55014780
13	55014973	55015129
13	55019328	55019423

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2634 nt):
ATGGCCACCATTGGGCCTTCTGGCCTGCATCCTGGAGAAAGAGCCTCAGTCTGCCCACACGAGGGCGTGC CAAGGCCCTCAGGTAGCTTAGAACTGGAATGCTTGCAGCAATTCAAGGTGACCAGGACACAGTTGCAGCA GATCCAAGCCAGTCTCCTGTGCTCCATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCTGTC CGGATGCTGCCCACATACGTGAGGTCCACACCACACGGCACCGAGCAAGGGGATTTCCTGGTGCTGGAGC TGGGGGCCACAGGAGCATCACTACGTGTGTTGTGGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGA GCCCAGGAGCCGGGAGTTTGTGATTCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAGCTCTTTGACTTT GCTGCCCGATGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTCA ATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAGGAGCACCCTCATTTCCTGGACAAAAGGTTTTAG GTGCAGCGGCGTGGAAGGCCAGGATGTGGTCCAGTTGCTAAGAGATGCCATTCAGAGGCAGGGGACCTAC AGGATTGATGTGGTAGCCATGGTGAATGACACGGTGGGCACCATGATGGGCTGTGAGCTGGGCACCAGGC CGTGTGAAGTCGGGCTGATTGTAGACACCGGTACCAACGCGTGCTACATGGAGGAGGCGCGGCACGTGGC CGCTCTGGATGAGGACCGCGGCCGCACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGACGAAGATGCT CTAGGGCCAGTACTGACCACCTTCGACTCTGCCCTGGACCGCGAGTCCCTGACTCCTGGTGCTCAAAGGT TTGAGAAGATGATTGGAGGCCTTTACCTGGGTGAGCTGGTGAGGCTGGTTCTGGTCCACTTGACCCAGCA CGGGGTCCTCTTTGATGGCTGCGCCTCTCCTGCGTTGCTGAGTCAAGGCTGTATCCTCCTGGACCACGTG GCTGAGATGGAGGACACCGCCACTGGGACAGCCCGCGTCCACACCATCCTGCAGGACTTGGGTCTGAGCC CTCGGGCCTCAGATGCTGAACTGGTGCAATATGTGTGCGTGGCTGTGTGCACACGGGCTGCCCAGCTCTG TGCGGCTGCCCTGGCTGCAGTCCTCTCCCGCCTCCAGCACAGCAGGGAGCAGCAGACATTGCAAGTGGCT GTGGCCACTGGAGGGCGAGTGTTTGAACGACACCCCAGGCGCATCCTGGAAGAGACCCTGGCACCATTTC AGCTGACCTTGGAGCAGATGACAGTGGTGCAGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGG AGAGGCCTCCTCCCTCCGCATGCTGCCCACTTACGTCCGAGCGACGCCCGACGGCAGCGAGCGAGGTGAT TTCCTGGCCTTGGACCTAGGGGGCACCAACTTCCGGGTCCTGTTGGTACGAGTGGCGGAGGGCAGTGTGC AGATCATCAACCAGGTCTACTCCATTCCTGAGTGTAGAGCCCAGGGCTCTGGACAGAAGCTCTTTGACCA TATTGTGGACTGCATCGTGGACTTCCAGAAGAGGCAGGGCCTTAGTGGACAGAGCCTACCCCTGGGTTTC ACCTTCTCTTTCCCATGCAAGCAGCTTGGCCTGGACCAGGGCATCCTCCTGAATTGGACTAAGGGGTTCA ATGCATCAGGCTGTGAGGGCCAGGATGTTGTGTATCTATTACGGGAAGCCATTAGGCGCAGACAGGCAGT GGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCC CGTTGTGAGATGGGCCTCATTGTCGGAACCGGCACCAACGCCTGTTACATGGAAGAGCTCCGCAATGTGG CAAGTGTGCCTGGGGACTCGGGCCTCATGTGCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTC ACTGGGCACACTCAGCACCCGCTTTGACACCAGTGTGGACCAGGCATCCATCAATCCAGGCAAACAGAGG TTTGAGAAAATGATCAGCGGTATGTACTTGGGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAATC TCGGAGTTCTCTTCCGAGGCCAGAAGACTCAATGCCTTCAGGCCAGGGACATCTTCAAGACTAAGTTCCT CTCTGAGATCGAAAGTGATAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACT CTGACATCTGATGACGCCTTGATGGTCCTGGAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCAACTCT GTGGGGCAGGTGTGGCTGCCGTGGTGGAGAAGATTCGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTC TGTGGGAGTAGATGGGACACTCTACAAGCTACATCCTCACTTCTCCAAGCTGGTGTCGGCAACAGTCCGG AAGCTAGCCCCTCAGTGCACCGTCACCTTTTTGCAGTCGGAGGATGGGTCTGGCAAAGGCGCAGCTTTGG TTACTGCTGTTGCTTGTCGCCTTACCCAGATGGCCCACGTCTGA
Translation (877 aa):
MATIGPSGLHPGERASVCPHEGVPRPSGSLELECLQQFKVTRTQLQQIQASLLCSMEQALKGQDSPAPSV RMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRSREFVIPQEVILGAGQQLFDF AARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLISWTKGFRCSGVEGQDVVQLLRDAIQRQGTY RIDVVAMVNDTVGTMMGCELGTRPCEVGLIVDTGTNACYMEEARHVAALDEDRGRTCVSIEWGSFYDEDA LGPVLTTFDSALDRESLTPGAQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCASPALLSQGCILLDHV AEMEDTATGTARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVLSRLQHSREQQTLQVA VATGGRVFERHPRRILEETLAPFQLTLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVRATPDGSERGD FLALDLGGTNFRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVDCIVDFQKRQGLSGQSLPLGF TFSFPCKQLGLDQGILLNWTKGFNASGCEGQDVVYLLREAIRRRQAVELNVVAIVNDTVGTMMSCGYDDP RCEMGLIVGTGTNACYMEELRNVASVPGDSGLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQR FEKMISGMYLGEIVRHILLHLTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLT LTSDDALMVLEVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVR KLAPQCTVTFLQSEDGSGKGAALVTAVACRLTQMAHV

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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