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Report for CCDS56880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56880.1 Public Mus musculus 13 Susd3 23 108 98 CCDS HistoryNCBI Gene:66329Re-query CCDS DB by CCDS ID:56880.1Re-query CCDS DB by GeneID:66329See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021816.11 ENSMUSP00000021816.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021816.11Link to Ensembl Protein Viewer:ENSMUSP00000021816.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021816Re-query CCDS DB by Protein ID:ENSMUSP00000021816
Original member NCBI NM_028340.2 NP_082616.1 Updated not alive Link to Nucleotide Sequence:NM_028340.2Link to Protein Sequence:NP_082616.1Re-query CCDS DB by Nucleotide ID:NM_028340Re-query CCDS DB by Protein ID:NP_082616
Current member NCBI NM_028340.3 NP_082616.1 Accepted alive Link to Nucleotide Sequence:NM_028340.3Link to Protein Sequence:NP_082616.1Re-query CCDS DB by Nucleotide ID:NM_028340Re-query CCDS DB by Protein ID:NP_082616Link to BLAST:NP_082616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082616.1 257 Q9D176-2 257 100% 0 0

Chromosomal Locations for CCDS 56880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49231136 49231331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49237424 49237612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49238789 49238936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49240483 49240671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49248419 49248470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGAGGAGGCTGTCACTCTCCAAGGTCACCTGCCTGGCCCTAGAGTCCAAAGGCACCTGTGCTCAGCTCC
AT
CCCCCGCCTCAAGGCACCTTGCAAGTCGTCCGTGGAGATGGCACATCTCTGGGGACTGTGCTCATATT
C
CACTGCCCCTCTGGCCACCAGATGGTGGGGTCTGGCCTCCTCACTTGTGCCTGGAATGGGAGCACCGTT
GAC
TGGTCTTCAGGAAGCCCTGTGTGCAAAGCTGTGCCACCGCATGAGACCTTCGGCTTTAAGGTGGCAG
TG
ATCGCCTCCATTGTGAGCTGTGCCATCATCCTGCTCATGTCCATGGCCTTCCTCACCTGCTGCCTCCT
C
AAGTGTGTGCAGAAAAATGAGCGGCGGCGTGCTGACAGGACGGCACAACTCTGGTACCAGCTGAGAGGC
GAG
GACCTGGAGACGGTACAAGCTGCCTACTTGGGCCTCAAGGGACACAACCACAATAACAGCAGCAGCG
TC
GGTGGTGGCAATGGTGGCCCCAGTGGTGGTGGCGGCAAGCCAGGAATTCAGCACAGCCAGGCCCATGA
C
AACCACAGCTTCACCACAGACCCTGGTGACATCAGAGAGCAGGCTGGTGTGACCCACAGTGTGGACAAA
GAC
CCTTGGACTTTCAGGATGGGAACTCCGGGCCCTGGTGGCTGCTCCAGCTCGCCAGGCACCTACGTGA
TG
GTCCACGCGTTGAACTCTGCAGGGCTGGCCCCTGGAAATCCTGGGAGGCCCAAAGTGTACCTTCCAGG
G
TGA


Translation (257 aa):
MRRLSLSKVTCLALESKGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGLLTCAWNGSTV
D
WSSGSPVCK
AVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRADRTAQLWYQLRG
E
DLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGIQHSQAHDNHSFT
TDPGDIREQAGVTHSVDK
D
PWTFRMGTPGPGGCSSSPGTYVMVHALNSAGLAPGNPGRPKVYLPG




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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