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Report for CCDS56688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56688.1 Public Mus musculus 10 Ipcef1 23 108 98 CCDS HistoryNCBI Gene:320495Re-query CCDS DB by CCDS ID:56688.1Re-query CCDS DB by GeneID:320495See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105617.7 ENSMUSP00000101242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105617.7Link to Ensembl Protein Viewer:ENSMUSP00000101242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105617Re-query CCDS DB by Protein ID:ENSMUSP00000101242
Original member Current member NCBI NM_001170800.1 NP_001164271.1 Accepted alive Link to Nucleotide Sequence:NM_001170800.1Link to Protein Sequence:NP_001164271.1Re-query CCDS DB by Nucleotide ID:NM_001170800Re-query CCDS DB by Protein ID:NP_001164271Link to BLAST:NP_001164271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164271.1 406 Q5DU31-1 406 100% 0 0

Chromosomal Locations for CCDS 56688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 6890475 6890675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6900570 6900763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6919714 6920086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6935187 6935275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6937101 6937159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6954670 6954741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6956059 6956132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6979514 6979672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTGTACAAGAAAA
AG
GAAAAGGGAACTTTTCTAAGCAACAAATGGAAAAAGTTCTGGGTGGTGCTGAAGGGCTCATCGCTGTA
T
TGGTATAGCAATCAAATGGCAGAGAAAGCAGATGGATTTGTCAACCTTTCAGATTTCACAGTGGAAAGA
GCC
TCTGAATGCAAGAAAAAAAATGCATTTAAGATCAATCACCCACAGATCAAAGCCTTCTACTTTGCAG
CA
GAGAATTTGCAGGAAATGAATGTGTGGTTAAACAAACTTGGATTTGCTGTGACCCACCAGGAATCCAT
C
ACAAAGGATGAAGAATGTTACAGTGAGAGCGAGCAGGAAGATCCTGAAGTTGCCGTGGAGGCACCACCC
CCT
CCGTATGCTTCCACAACTTCCTCTCCTGTGGCTGCACAGTGGGCATCTTCTTCTTCACCTAAACGGA
GA
GAAACATCATGTTCTTTCTCTTCTCTGGAAAATACAGTAAAGGCACCCAGCCAGTTTTCTTCCTCGGG
A
TCTAAAGAACGACAGTCCTGGCACAACATAGTTAACAGCTCACCTGCTACTGAAGATGCGGGGCTTCCC
CTC
ACATTTGCTGAGCAGGTCCACACACTTGCCTTCTCAGAAGCAAGCAATTGCCAGGCCCCAGAAAACA
AC
TGCATCACATCAGAAGGTGGTTTGTTGAACTTGTTGTCTAGTGATGACACTTCTTCACTGAATAACAA
T
AAAGACCATCTAACAGTCCCAGACAGAGCTGCTGGATCAAGAATGGCAGACAGAGAAGAAATAAAATCA
TCT
GAAGATGATGAGATGGAAAAATTGTACAAATCACTGGAGCAGGCTAGCCTGTCTCCTCTTGGGGACC
GG
CGGCCTTCAACCAAGAAGGAGCTGAGAAAGTCTTTTGTGAAGCGATGCAAAAACCCATCGATAAACGA
G
AAGTTGCACAAGATCAGAACCCTGAACAGCACATTAAAGTGCAAAGAACACGATTTGGCTATGATCAAC
CAG
CTGCTGGATGATCCAAAGCTGACAGCCAGGAAGTACAGAGAGTGGAAGGTCATGAACACCCTGCTGA
TC
CAGGACATCTATCAGCAGCAGGCACCTCAGGACCCTGAAGTCACCCCTCAGGAAGTCATGAATCCCAC
G
TCTTCTGATTGTGTGGAAAATTCTCTTTGA


Translation (406 aa):
MSRRRISCKDLGHADCQGWLYKKKEKGTFLSNKWKKFWVVLKGSSLYWYSNQMAEKADGFVNLSDFTVER
A
SECKKK
NAFKINHPQIKAFYFAAENLQEMNVWLNKLGFAVTHQESITKDEECYSESEQEDPEVAVEAPP
P
PYASTTSSPV
AAQWASSSSPKRRETSCSFSSLENTVKAPSQFSSSGSKERQSWHNIVNSSPATEDAGLP
L
TFAEQVHTLAFSEASNCQAPENNCITSEGGLLNLLSSDDTSSLNNNKDHLTVPDRAAGSRMADR
EEIKS
S
EDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCKNPSINEKLHKIRTLNSTLK
CKEHDLAMIN
Q
LLDDPKLTARKYREWKVMNTLLIQDIYQQQAPQDPEVTPQEVMNPTSSDCVENSL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser