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Report for CCDS55491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55491.1 Public Homo sapiens X IGSF1 24 110 108 CCDS HistoryNCBI Gene:3547Re-query CCDS DB by CCDS ID:55491.1Re-query CCDS DB by GeneID:3547See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55491.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370903.8 ENSP00000359940.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370903.8Link to Ensembl Protein Viewer:ENSP00000359940.3Re-query CCDS DB by Nucleotide ID:ENST00000370903Re-query CCDS DB by Protein ID:ENSP00000359940
Original member Current member NCBI NM_001170961.2 NP_001164432.1 Accepted alive Link to Nucleotide Sequence:NM_001170961.2Link to Protein Sequence:NP_001164432.1Re-query CCDS DB by Nucleotide ID:NM_001170961Re-query CCDS DB by Protein ID:NP_001164432Link to BLAST:NP_001164432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164432.1 1341 Q8N6C5-4 1341 100% 0 0

Chromosomal Locations for CCDS 55491.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 131273796 131273931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274083 131274206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274599 131274877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274999 131275286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131275478 131275765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131275961 131276248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131276939 131277226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131277856 131278134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131278461 131278751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131279143 131279190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131279271 131279341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131281218 131281338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131281666 131281944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131282444 131282737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131282980 131283264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285179 131285466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285767 131286048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286437 131286463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286605 131286674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4026 nt):
ATGACCCTGGACAGACCAGGGGAGGGGGCCACCATGCTGAAGACATTCACTGTTTTGCTCTTTTGCATTC
GGATGAGTCTGGGTATGACATCAATAGTGATGGACCCTCAACCAGAGTTGTGGATAGAGTCCAACTACCC
CCAGGCCCCTTGGGAGAACATCACGCTTTGGTGCCGAAGCCCCTCTCGGATATCAAGCAAGTTCCTGCTG
CTGAAGGATAAGACACAGATGACCTGGATCCGCCCTTCCCACAAGACCTTCCAAGTTTCATTCCTTATAG
GTGCCCTTACTGAGTCCAATGCAGGTCTTTACCGGTGCTGCTACTGGAAGGAGACAGGCTGGTCAAAGCC
CAGTAAAGTTCTAGAGTTGGAGGCACCAGGCCAACTGCCCAAGCCCATCTTCTGGATTCAGGCTGAGACC
CCCGCTCTTCCTGGGTGTAATGTTAACATCCTCTGCCATGGCTGGCTGCAGGATTTGGTATTCATGCTGT
TTAAAGAGGGATATGCAGAGCCTGTGGATTACCAAGTCCCAACTGGGACAATGGCCATATTCTCCATTGA
CAACCTGACACCTGAGGATGAAGGGGTTTACATCTGCCGCACTCATATCCAGATGCTCCCCACCCTGTGG
TCAGAGCCCAGCAACCCCCTGAAGCTGGTTGTAGCAGGACTCTACCCCAAACCAACTTTGACAGCCCATC
CTGGGCCCATCATGGCACCTGGAGAAAGCCTGAATCTCAGGTGCCAAGGGCCAATCTATGGAATGACCTT
TGCTCTAATGAGGGTTGAAGACTTGGAGAAGTCCTTTTACCACAAGAAGACAATAAAAAATGAGGCAAAT
TTCTTCTTCCAGTCTTTGAAGATCCAAGATACTGGACATTACCTCTGTTTTTACTATGACGCATCATATA
GAGGTTCACTCCTTAGTGATGTCCTGAAAATCTGGGTGACTGACACTTTCCCCAAGACCTGGCTACTTGC
TCGGCCCAGTGCTGTGGTCCAAATGGGTCAGAATGTGAGCCTACGGTGTCGAGGACCAGTGGATGGAGTG
GGTCTTGCACTCTATAAGAAAGGAGAAGACAAACCACTTCAATTTTTGGATGCCACCAGCATCGATGACA
ACACATCATTCTTCCTCAACAATGTAACCTACAGTGATACTGGCATCTATAGCTGCCACTATCTTCTCAC
CTGGAAGACCTCCATTAGGATGCCATCACACAACACTGTGGAGCTTATGGTTGTAGATAAGCCCCCCAAA
CCCTCCCTGTCAGCTTGGCCAAGCACTGTGTTCAAGCTAGGAAAGGCCATCACCCTTCAGTGCCGAGTAT
CTCATCCAGTACTGGAATTTTCTCTGGAATGGGAAGAAAGAGAAACATTCCAAAAATTCTCAGTAAACGG
AGACTTCATCATCAGTAATGTTGACGGGAAAGGCACAGGGACCTACAGTTGCAGCTATCGCGTAGAGACA
CATCCTAACATCTGGTCACATCGCAGTGAGCCCCTGAAGCTGATGGGGCCAGCAGGCTATCTCACCTGGA
ATTACGTTCTGAATGAAGCTATCAGGTTGTCTCTAATCATGCAGCTTGTTGCCTTGCTGTTGGTAGTGCT
GTGGATAAGGTGGAAGTGTCGGAGACTCAGAATCAGAGAAGCCTGGTTGCTGGGAACAGCTCAAGGGGTC
ACCATGCTCTTCATAGTCACGGCCCTTCTCTGCTGTGCAATTTCTTTTGCAGGACTGTGCAATGGGGTAT
TGATAGAAGAGACTGAAATAGTCATGCCAACCCCTAAGCCTGAGCTGTGGGCAGAGACCAACTTTCCTCT
GGCCCCGTGGAAGAACTTAACCCTCTGGTGCAGAAGCCCTTCTGGCTCAACTAAGGAGTTTGTGTTGCTG
AAGGATGGGACCGGGTGGATCGCCACTCGCCCGGCCTCAGAGCAGGTCCGGGCTGCCTTCCCCCTTGGCG
CCCTGACCCAGAGCCACACCGGGAGCTACCACTGCCATTCATGGGAGGAGATGGCTGTATCGGAGCCCAG
TGAGGCACTTGAGCTGGTGGGGACAGACATCCTCCCCAAACCTGTCATTTCTGCTTCCCCCACAATCCGG
GGCCAGGAACTACAACTCCGGTGCAAAGGATGGCTGGCAGGCATGGGGTTTGCTCTGTATAAGGAGGGAG
AGCAAGAACCTGTCCAGCAACTTGGTGCTGTTGGAAGAGAAGCCTTCTTTACAATCCAGAGAATGGAGGA
TAAAGACGAAGGCAATTACAGCTGCCGCACTCACACTGAAAAACGCCCCTTCAAGTGGTCTGAGCCCAGT
GAGCCGCTGGAGCTTGTCATAAAAGAAATGTACCCTAAGCCCTTCTTCAAGACATGGGCCAGCCCTGTGG
TCACCCCTGGTGCCCGAGTGACTTTCAATTGCTCCACCCCCCACCAGCATATGAGCTTTATTCTTTACAA
AGATGGAAGTGAAATAGCATCCAGTGACAGGTCCTGGGCAAGTCCGGGGGCCAGTGCAGCTCACTTTCTA
ATCATTTCGGTGGGCATTGGTGATGGAGGGAATTACAGCTGCCGATATTATGACTTTTCTATCTGGTCTG
AGCCCAGCGACCCTGTGGAGCTCGTGGTGACAGAATTCTACCCCAAACCCACTCTCCTGGCACAGCCAGG
TCCTGTGGTGTTTCCTGGGAAGAGTGTGATCCTGCGCTGCCAAGGGACTTTCCAGGGCATGAGGTTCGCC
CTCTTGCAGGAGGGAGCCCATGTTCCCTTACAGTTTCGGAGTGTCTCAGGGAACTCAGCTGACTTCCTTC
TCCACACTGTTGGAGCAGAGGACTCTGGGAACTATAGCTGTATCTACTATGAGACAACCATGTCAAACAG
GGGGTCATATCTCAGTATGCCCCTTATGATCTGGGTGACTGACACATTCCCTAAGCCATGGTTGTTTGCT
GAGCCCAGTTCTGTGGTTCCCATGGGGCAGAATGTTACTCTCTGGTGCCGAGGGCCGGTCCATGGAGTAG
GATACATTCTGCACAAAGAAGGAGAAGCCACTTCAATGCAGCTCTGGGGATCCACCAGTAATGACGGGGC
ATTCCCCATCACCAATATATCTGGTACTAGCATGGGGCGTTACAGCTGCTGCTACCACCCTGACTGGACC
AGTTCTATCAAGATACAACCTAGCAACACCCTGGAACTCCTAGTCACAGGCTTACTCCCCAAACCCAGCC
TATTAGCCCAGCCTGGTCCCATGGTGGCCCCTGGCGAAAATATGACTCTTCAGTGTCAAGGGGAACTGCC
AGACTCAACATTTGTCCTGTTGAAGGAGGGGGCTCAGGAGCCTTTAGAGCAACAGAGGCCAAGTGGGTAC
AGGGCTGACTTCTGGATGCCAGCAGTGAGAGGTGAAGACTCTGGGATCTATAGCTGTGTTTATTATTTGG
ACTCTACTCCCTTTGCAGCTTCAAATCACAGTGACTCCCTGGAGATCTGGGTGACTGATAAGCCCCCTAA
ACCCTCTCTGTCAGCCTGGCCCAGCACCATGTTCAAGTTAGGGAAGGACATCACCCTTCAGTGCCGAGGA
CCCCTGCCAGGTGTTGAATTTGTCCTAGAACATGATGGAGAAGAAGCACCTCAGCAGTTTTCAGAGGATG
GAGACTTTGTCATCAACAACGTAGAAGGAAAAGGCATTGGAAACTACAGCTGCAGCTACCGCCTCCAGGC
CTACCCTGATATCTGGTCAGAGCCTAGTGATCCCCTGGAGCTGGTGGGGGCAGCAGGGCCTGTTGCTCAG
GAGTGCACTGTAGGGAACATTGTCCGAAGTAGCCTAATCGTGGTGGTTGTTGTAGCCTTGGGGGTAGTGC
TAGCCATAGAGTGGAAGAAGTGGCCTCGACTGCGAACCAGAGGCTCAGAGACAGACGGAAGAGACCAGAC
CATTGCCCTTGAAGAGTGTAACCAAGAAGGAGAACCAGGCACCCCTGCCAATTCTCCTTCATCAACCTCT
CAGAGAATCTCTGTGGAACTGCCCGTTCCAATATAA

Translation (1341 aa):
MTLDRPGEGATMLKTFTVLLFCIRMSLGMTSIVMDPQPELWIESNYPQAPWENITLWCRSPSRISSKFLL
LKDKTQMTWIRPSHKTFQVSFLIGALTESNAGLYRCCYWKETGWSKPSKVLELEAPGQLPKPIFWIQAET
PALPGCNVNILCHGWLQDLVFMLFKEGYAEPVDYQVPTGTMAIFSIDNLTPEDEGVYICRTHIQMLPTLW
SEPSNPLKLVVAGLYPKPTLTAHPGPIMAPGESLNLRCQGPIYGMTFALMRVEDLEKSFYHKKTIKNEAN
FFFQSLKIQDTGHYLCFYYDASYRGSLLSDVLKIWVTDTFPKTWLLARPSAVVQMGQNVSLRCRGPVDGV
GLALYKKGEDKPLQFLDATSIDDNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPK
PSLSAWPSTVFKLGKAITLQCRVSHPVLEFSLEWEERETFQKFSVNGDFIISNVDGKGTGTYSCSYRVET
HPNIWSHRSEPLKLMGPAGYLTWNYVLNEAIRLSLIMQLVALLLVVLWIRWKCRRLRIREAWLLGTAQGV
TMLFIVTALLCCAISFAGLCNGVLIEETEIVMPTPKPELWAETNFPLAPWKNLTLWCRSPSGSTKEFVLL
KDGTGWIATRPASEQVRAAFPLGALTQSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASPTIR
GQELQLRCKGWLAGMGFALYKEGEQEPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEKRPFKWSEPS
EPLELVIKEMYPKPFFKTWASPVVTPGARVTFNCSTPHQHMSFILYKDGSEIASSDRSWASPGASAAHFL
IISVGIGDGGNYSCRYYDFSIWSEPSDPVELVVTEFYPKPTLLAQPGPVVFPGKSVILRCQGTFQGMRFA
LLQEGAHVPLQFRSVSGNSADFLLHTVGAEDSGNYSCIYYETTMSNRGSYLSMPLMIWVTDTFPKPWLFA
EPSSVVPMGQNVTLWCRGPVHGVGYILHKEGEATSMQLWGSTSNDGAFPITNISGTSMGRYSCCYHPDWT
SSIKIQPSNTLELLVTGLLPKPSLLAQPGPMVAPGENMTLQCQGELPDSTFVLLKEGAQEPLEQQRPSGY
RADFWMPAVRGEDSGIYSCVYYLDSTPFAASNHSDSLEIWVTDKPPKPSLSAWPSTMFKLGKDITLQCRG
PLPGVEFVLEHDGEEAPQQFSEDGDFVINNVEGKGIGNYSCSYRLQAYPDIWSEPSDPLELVGAAGPVAQ
ECTVGNIVRSSLIVVVVVALGVVLAIEWKKWPRLRTRGSETDGRDQTIALEECNQEGEPGTPANSPSSTS
QRISVELPVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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