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Report for CCDS55429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55429.1 Public Homo sapiens X ARHGEF9 24 110 108 CCDS HistoryNCBI Gene:23229Re-query CCDS DB by CCDS ID:55429.1Re-query CCDS DB by GeneID:23229See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000624843.3 ENSP00000485626.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000624843.3Link to Ensembl Protein Viewer:ENSP00000485626.1Re-query CCDS DB by Nucleotide ID:ENST00000624843Re-query CCDS DB by Protein ID:ENSP00000485626
Original member Current member NCBI NM_001173480.2 NP_001166951.1 Accepted alive Link to Nucleotide Sequence:NM_001173480.2Link to Protein Sequence:NP_001166951.1Re-query CCDS DB by Nucleotide ID:NM_001173480Re-query CCDS DB by Protein ID:NP_001166951Link to BLAST:NP_001166951.1
Original member Current member NCBI NM_001369042.1 NP_001355971.1 Accepted alive Link to Nucleotide Sequence:NM_001369042.1Link to Protein Sequence:NP_001355971.1Re-query CCDS DB by Nucleotide ID:NM_001369042Re-query CCDS DB by Protein ID:NP_001355971Link to BLAST:NP_001355971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166951.1 414 O43307-3 414 100% 0 0
NP_001355971.1 414 O43307-3 414 100% 0 0

Chromosomal Locations for CCDS 55429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 63638028 63638209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63643980 63644048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63655494 63655737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63665886 63666017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63674038 63674167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63678340 63678572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63697125 63697304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 63706258 63706332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGCGGGCCAATGTCATCAATGAGATAATGAGCACTGAGCGTCACTACATCAAGCACCTCAAGGATATTT
GTGAGGGCTATCTGAAGCAGTGCCGGAAGAGAAGGGACATGTTCAGTGACGAGCAACTGAAGGTAATCTT
TGGGAACATTGAAGATATCTACAGATTTCAGATGGGCTTTGTGAGAGACCTGGAGAAACAGTATAACAAT
GATGACCCCCACCTCAGCGAGATAGGACCCTGCTTCCTAGAGCACCAAGATGGATTCTGGATATACTCTG
AGTATTGTAACAACCACCTGGATGCTTGCATGGAGCTCTCCAAACTGATGAAGGACAGCCGCTACCAGCA
CTTCTTTGAGGCCTGTCGCCTCTTGCAGCAGATGATTGACATTGCTATCGATGGTTTCCTTTTGACTCCA
GTGCAGAAGATCTGCAAGTATCCCTTACAGTTGGCTGAGCTCCTAAAGTATACTGCCCAAGACCACAGTG
ACTACAGGTATGTGGCAGCTGCTTTGGCTGTCATGAGAAATGTGACTCAGCAGATCAACGAACGCAAGCG
ACGTTTAGAGAATATTGACAAGATTGCTCAGTGGCAGGCTTCTGTCCTAGACTGGGAGGGCGAGGACATC
CTAGACAGGAGCTCGGAGCTGATCTACACTGGGGAGATGGCCTGGATCTACCAGCCCTACGGCCGCAACC
AGCAGCGGGTCTTCTTCCTGTTTGACCACCAGATGGTCCTCTGCAAGAAGGACCTAATCCGGAGAGACAT
CCTGTACTACAAAGGCCGCATTGACATGGATAAATATGAGGTAGTTGACATTGAGGATGGCAGAGATGAT
GACTTCAATGTCAGCATGAAGAATGCCTTTAAGCTTCACAACAAGGAGACTGAGGAGATACATCTGTTCT
TTGCCAAGAAGCTGGAGGAAAAAATACGCTGGCTCAGGGCTTTCAGAGAAGAGAGGAAAATGGTACAGGA
AGATGAAAAAATTGGCTTTGAAATTTCTGAAAACCAGAAGAGGCAGGCTGCAATGACTGTGAGAAAAGTC
CCTAAGCAAAAAGGTGTCAACTCTGCCCGCTCAGTTCCTCCTTCCTACCCACCACCGCAGGACCCGTTAA
ACCACGGCCAGTACCTGGTCCCCGACGGCATCGCTCAGTCGCAGGTCTTTGAGTTCACCGAACCCAAGCG
CAGCCAGTCACCATTCTGGCAAAACTTCAGCAGGTTAACCCCCTTCAAAAAATGA

Translation (414 aa):
MRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNN
DDPHLSEIGPCFLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTP
VQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGEDI
LDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVVDIEDGRDD
DFNVSMKNAFKLHNKETEEIHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKRQAAMTVRKV
PKQKGVNSARSVPPSYPPPQDPLNHGQYLVPDGIAQSQVFEFTEPKRSQSPFWQNFSRLTPFKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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