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Report for CCDS55154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55154.1 Public Homo sapiens 7 FOXP2 22 109 92 CCDS HistoryNCBI Gene:93986Re-query CCDS DB by CCDS ID:55154.1Re-query CCDS DB by GeneID:93986See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403559.8 ENSP00000385069.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403559.8Link to Ensembl Protein Viewer:ENSP00000385069.4Re-query CCDS DB by Nucleotide ID:ENST00000403559Re-query CCDS DB by Protein ID:ENSP00000385069
Original member NCBI NM_148900.3 NP_683698.2 Updated not alive Link to Nucleotide Sequence:NM_148900.3Link to Protein Sequence:NP_683698.2Re-query CCDS DB by Nucleotide ID:NM_148900Re-query CCDS DB by Protein ID:NP_683698
Current member NCBI NM_148900.4 NP_683698.2 Accepted alive Link to Nucleotide Sequence:NM_148900.4Link to Protein Sequence:NP_683698.2Re-query CCDS DB by Nucleotide ID:NM_148900Re-query CCDS DB by Protein ID:NP_683698Link to BLAST:NP_683698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683698.2 732 O15409-9 732 100% 0 0

Chromosomal Locations for CCDS 55154.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 114426512 114426679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114534617 114534706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114628540 114628677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114629592 114629642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114629805 114630005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114631528 114631705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114642410 114642623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114644685 114644789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114652203 114652290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114653926 114654009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114658066 114658267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114659356 114659432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114659572 114659673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114662065 114662186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114663450 114663519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114664273 114664436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114689782 114689926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAA
GC
AGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAGTGGTGACACCAGCTCTGAAGTAAGCACAGT
A
GAACTGCTGCATCTGCAACAACAGCAGGCTCTCCAGGCAGCAAGACAACTTCTTTTACAGCAGCAAACA
AGT
GGATTGAAATCTCCTAAGAGCAGTGATAAACAGAGACCACTGCAGGTGCCTGTGTCAGTGGCCATGA
TG
ACTCCCCAGGTGATCACCCCTCAGCAAATGCAGCAGATCCTTCAGCAACAAGTCCTGTCTCCTCAGCA
G
CTACAAGCCCTTCTCCAACAACAGCAGGCTGTCATGCTGCAGCAGGATTTTTTGGATTCTGGATTGGAA
AAT
TTCAGAGCTGCCTTGGAAAAAAATCAACAACTACAAGAGTTTTACAAGAAACAGCAAGAGCAGTTAC
AT
CTTCAGCTTTTGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCA
A
CAACAACAACAACAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCATCCT
GGA
AAGCAAGCGAAAGAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGCAGCCCAGCAGCTTGTCT
TC
CAGCAGCAGCTTCTCCAGATGCAACAACTCCAGCAGCAGCAGCATCTGCTCAGCCTTCAGCGTCAGGG
A
CTCATCTCCATTCCACCTGGCCAGGCAGCACTTCCTGTCCAATCGCTGCCTCAAGCTGGCTTAAGTCCT
GCT
GAGATTCAGCAGTTATGGAAAGAAGTGACTGGAGTTCACAGTATGGAAGACAATGGCATTAAACATG
GA
GGGCTAGACCTCACTACTAACAATTCCTCCTCGACTACCTCCTCCAACACTTCCAAAGCATCACCACC
A
ATAACTCATCATTCCATAGTGAATGGACAGTCTTCAGTTCTAAGTGCAAGACGAGACAGCTCGTCACAT
GAG
GAGACTGGGGCCTCTCACACTCTCTATGGCCATGGAGTTTGCAAATGGCCAGGCTGTGAAAGCATTT
GT
GAAGATTTTGGACAGTTTTTAAAGCACCTTAACAATGAACACGCATTGGATGACCGAAGCACTGCTCA
G
TGTCGAGTGCAAATGCAGGTGGTGCAACAGTTAGAAATACAGCTTTCTAAAGAACGCGAACGTCTTCAA
GCA
ATGATGACCCACTTGCACATGCGACCCTCAGAGCCCAAACCATCTCCCAAACCTCTAAATCTGGTGT
CT
AGTGTCACCATGTCGAAGAATATGTTGGAGACATCCCCACAGAGCTTACCTCAAACCCCTACCACACC
A
ACGGCCCCAGTCACCCCGATTACCCAGGGACCCTCAGTAATCACCCCAGCCAGTGTGCCCAATGTGGGA
GCC
ATACGAAGGCGACATTCAGACAAATACAACATTCCCATGTCATCAGAAATTGCCCCAAACTATGAAT
TT
TATAAAAATGCAGATGTCAGACCTCCATTTACTTATGCAACTCTCATAAGGCAGGCTATCATGGAGTC
A
TCTGACAGGCAGTTAACACTTAATGAAATTTACAGCTGGTTTACACGGACATTTGCTTACTTCAGGCGT
AAT
GCAGCAACTTGGAAGAATGCAGTACGTCATAATCTTAGCCTGCACAAGTGTTTTGTTCGAGTAGAAA
AT
GTTAAAGGAGCAGTATGGACTGTGGATGAAGTAGAATACCAGAAGCGAAGGTCACAAAAGATAACAGG
A
AGTCCAACCTTAGTAAAAAATATACCTACCAGTTTAGGCTATGGAGCAGCTCTTAATGCCAGTTTGCAG
GCT
GCCTTGGCAGAGAGCAGTTTACCTTTGCTAAGTAATCCTGGACTGATAAATAATGCATCCAGTGGCC
TA
CTGCAGGCCGTCCACGAAGACCTCAATGGTTCTCTGGATCACATTGACAGCAATGGAAACAGTAGTCC
G
GGCTGCTCACCTCAGCCGCACATACATTCAATCCACGTCAAGGAAGAGCCAGTGATTGCAGAGGATGAA
GAC
TGCCCAATGTCCTTAGTGACAACAGCTAATCACAGTCCAGAATTAGAAGACGACAGAGAGATTGAAG
AA
GAGCCTTTATCTGAAGATCTGGAATGA


Translation (732 aa):
MMQESATETISNSSMNQNGMSTLSSQLDAGSRDGRSSGDTSSEVSTVELLHLQQQQALQAARQLLLQQQT
S
GLKSPKSSDKQRPLQ
VPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQDFLDSGLE
N
FRAALEKN
QQLQEFYKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHP
G
KQAKE
QQQQQQQQQQLAAQQLVFQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQAALPVQSLPQAGLSP
A
EIQQLWKEVTGVHSMEDNGIKHGGLDLTTNNSSSTTSSNTSKASPPITHHSIVNGQSSVLSARRD
SSSH
E
ETGASHTLYGHGVCKWPGCESICEDFGQFL
KHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKERERLQ
A
MMTHLHMRPSEPKPSPKP
LNLVSSVTMSKNMLETSPQSLPQTPTTPTAPVTPITQGPSVITPASVPNVG
A
IRRRHSDKYNIPMSS
EIAPNYEFYKNADVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRR
N
AATWK
NAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRRSQKITGSPTLVKNIPTSLGYGAALNASLQ
A
ALAESSLPLLSNPGLINNASSGLLQAVHEDLNGSLDHIDSNGNSSPGCSPQPH
IHSIHVKEEPVIAEDE
D
CPMSLVTTANHSPELEDDREIEEEPLSEDLE




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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