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Report for CCDS55057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55057.1 Public Homo sapiens 6 ALDH8A1 24 110 108 CCDS HistoryNCBI Gene:64577Re-query CCDS DB by CCDS ID:55057.1Re-query CCDS DB by GeneID:64577See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55057.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367847.2 ENSP00000356821.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367847.2Link to Ensembl Protein Viewer:ENSP00000356821.2Re-query CCDS DB by Nucleotide ID:ENST00000367847Re-query CCDS DB by Protein ID:ENSP00000356821
Original member Current member NCBI NM_001193480.2 NP_001180409.1 Accepted alive Link to Nucleotide Sequence:NM_001193480.2Link to Protein Sequence:NP_001180409.1Re-query CCDS DB by Nucleotide ID:NM_001193480Re-query CCDS DB by Protein ID:NP_001180409Link to BLAST:NP_001180409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180409.1 437 Q9H2A2-4 437 100% 0 0

Chromosomal Locations for CCDS 55057.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 134918415 134918867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134929054 134929215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134932776 134933032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134942409 134942564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134943819 134943966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134949916 134950053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCTGGAACAAACGCACTTTTGATGCTGGAAAACTTCATAGATGGAAAATTTTTACCTTGTAGCTCAT
AT
ATAGATTCTTACGACCCATCAACAGGGGAAGTGTATTGCAGAGTGCCAAATAGTGGAAAAGACGAGAT
C
GAAGCCGCGGTCAAGGCCGCCAGAGAAGCCTTTCCCAGCTGGTCATCCCGCAGCCCCCAGGAGCGCTCA
CGG
GTCCTGAACCAGGTGGCGGATTTGCTGGAGCAGTCCCTGGAGGAGTTTGCCCAGGCCGAGTCTAAAG
AC
CAAGGGAAAACCTTAGCACTGGCAAGAACCATGGACATTCCCCGGTCTGTGCAGAACTTCAGGTTCTT
C
GCTTCCTCCAGCCTGCACCACACGTCAGAGTGCACGCAGATGGACCACCTGGGCTGCATGCACTACACG
GTG
CGGGCCCCGGTGGGAGTCGGTGTTCCACCAGGTGTGGTCAATATTGTGTTTGGAACCGGGCCCAGGG
TG
GGTGAGGCCCTGGTGTCCCACCCAGAGGTGCCCCTGATCTCCTTCACCGGGAGCCAGCCCACCGCTGA
G
CGGATCACCCAGCTGAGCGCTCCCCACTGCAAAAAGCTCTCCCTGGAGCTGGGGGGCAAGAATCCTGCC
ATC
ATCTTTGAGGACGCCAACCTGGATGAGTGCATTCCGGCAACCGTCAGGTCCAGCTTTGCCAACCAGG
GT
GAAATCTGTCTCTGTACCAGCAGGATCTTTGTCCAGAAGAGCATCTATAGTGAATTTTTAAAGAGATT
T
GTAGAAGCTACCAGAAAGTGGAAAGTCGGCATTCCCTCTGATCCACTGGTGAGCATAGGTGCTCTGATA
AGT
AAAGCACATTTGGAGAAAGTCAGAAGTTACGTCAAGAGAGCTCTTGCTGAAGGTGCCCAAATTTGGT
GC
GGTGAGGGAGTGGATAAGTTGAGCCTCCCTGCCAGGAACCAGGCAGGCTACTTTATGCTTCCCACGGT
G
ATAACAGACATTAAGGATGAATCCTGCTGCATGACGGAAGAGATATTTGGTCCAGTGACGTGTGTCGTC
CCC
TTTGATAGTGAAGAGGAGGTGATTGAAAGAGCCAACAACGTTAAGTATGGGCTGGCGGCTACCGTGT
GG
TCCAGCAATGTGGGGCGCGTCCACCGGGTGGCTAAGAAGCTGCAGTCTGGCTTGGTCTGGACCAACTG
C
TGGCTCATCAGGGAGCTGAACCTTCCTTTCGGGGGGATGAAGAGTTCTGGAATAGGTAGAGAGGGAGCC
AAG
GACTCTTACGACTTCTTCACTGAGATCAAAACCATCACCGTTAAACACTGA


Translation (437 aa):
MAGTNALLMLENFIDGKFLPCSSYIDSYDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPSWSSRSPQERS
R
VLNQVADLLEQSLEEFAQAESKDQ
GKTLALARTMDIPRSVQNFRFFASSSLHHTSECTQMDHLGCMHYT
V
RAPVGV
GVPPGVVNIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPA
I
IFEDANLDECIPATVRSSFANQ
GEICLCTSRIFVQKSIYSEFLKRFVEATRKWKVGIPSDPLVSIGALI
S
KAHLEK
VRSYVKRALAEGAQIWCGEGVDKLSLPARNQAGYFMLPTVITDIKDESCCMTEEIFGPVTCVV
P
FDSEEEVIERANNVKYGLAATVWSSNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGA
K
DSYDFFTEIKTITVKH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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