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Report for CCDS54619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54619.1 Reviewed, withdrawal pending Homo sapiens 3 PLCXD2 24 110 108 CCDS HistoryNCBI Gene:257068Re-query CCDS DB by CCDS ID:54619.1Re-query CCDS DB by GeneID:257068See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 54619.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000477665.2 ENSP00000420686.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000477665.2Link to Ensembl Protein Viewer:ENSP00000420686.1Re-query CCDS DB by Nucleotide ID:ENST00000477665Re-query CCDS DB by Protein ID:ENSP00000420686
Original member NCBI NM_001185106.1 NP_001172035.1 MANE Select Removed not alive Link to Nucleotide Sequence:NM_001185106.1Link to Protein Sequence:NP_001172035.1Re-query CCDS DB by Nucleotide ID:NM_001185106Re-query CCDS DB by Protein ID:NP_001172035Link to BLAST:NP_001172035.1

Chromosomal Locations for CCDS 54619.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 111675246 111675408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111707926 111708386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111713887 111714128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111732619 111732670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGCTAGCAGTTAGGAAGGCCAGGAGGAAACTCAGGATGGGGACCATCTGCTCCCCCAACCCCAGCGGGA
CAAAGACATCATCGGAGGTCTGCAATGCCGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACCTCCC
CCTTTCCAATCTGGCAATCCCAGGCTCACATGATTCATTCAGCTACTGGGTGGATGAAAAGTCCCCAGTG
GGGCCTGACCAAACCCAAGCTATCAAACGCCTCGCCAGGATCTCCTTGGTGAAGAAGCTAATGAAGAAGT
GGTCTGTGACTCAGAACCTGACATTTCGAGAACAGCTGGAAGCTGGGATCCGCTACTTTGACCTGCGTGT
GTCTTCCAAACCAGGGGATGCCGACCAGGAGATCTACTTCATCCATGGGCTTTTTGGCATCAAGGTCTGG
GATGGGCTGATGGAAATTGACTCGTTTCTTACACAGCACCCCCAGGAGATTATCTTCCTGGATTTCAACC
ACTTCTATGCCATGGATGAGACCCATCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGAAACAA
GCTGTGCCCAGCCTGCAGTGTGGAAAGTTTGACGCTGCGAACTCTGTGGGAGAAGAACTGCCAGGTTCTT
ATTTTCTACCACTGTCCCTTCTACAAGCAGTACCCCTTCCTGTGGCCAGGAAAGAAGATTCCAGCGCCCT
GGGCAAACACCACAAGTGTGCGCAAACTAATCCTCTTCTTGGAGACCACTCTGAGTGAGCGGGCCTCACG
GGGCTCCTTCCATGTCTCCCAAGCGATCCTCACCCCCAGAGTGAAGACCATTGCCCGGGGCTTGGTTGGG
GGCCTCAAGAACACGCTGGTTCATAGCAATCGCTGGAACAGCCATGGGCCATCCCTGCTGAGTCAGGAAA
GAAGCTGA

Translation (305 aa):
MLAVRKARRKLRMGTICSPNPSGTKTSSEVCNADWMASLPPHLHNLPLSNLAIPGSHDSFSYWVDEKSPV
GPDQTQAIKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDADQEIYFIHGLFGIKVW
DGLMEIDSFLTQHPQEIIFLDFNHFYAMDETHHKCLVLRIQEAFGNKLCPACSVESLTLRTLWEKNCQVL
IFYHCPFYKQYPFLWPGKKIPAPWANTTSVRKLILFLETTLSERASRGSFHVSQAILTPRVKTIARGLVG
GLKNTLVHSNRWNSHGPSLLSQERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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