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Report for CCDS54240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54240.1 Public Homo sapiens 19 ZNF208 24 110 108 CCDS HistoryNCBI Gene:7757Re-query CCDS DB by CCDS ID:54240.1Re-query CCDS DB by GeneID:7757See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397126.9 ENSP00000380315.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397126.9Link to Ensembl Protein Viewer:ENSP00000380315.3Re-query CCDS DB by Nucleotide ID:ENST00000397126Re-query CCDS DB by Protein ID:ENSP00000380315
Original member Current member NCBI NM_007153.3 NP_009084.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007153.3Link to Protein Sequence:NP_009084.2Re-query CCDS DB by Nucleotide ID:NM_007153Re-query CCDS DB by Protein ID:NP_009084Link to BLAST:NP_009084.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009084.2 1280 O43345-1 1280 100% 0 0

Chromosomal Locations for CCDS 54240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 21971191 21974807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21987216 21987311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21988783 21988909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22010792 22010794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3843 nt):
ATGGGATCATTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACTG
CA
CAGCAGAATTTATATAGAAATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGGGTATTGCTGC
C
TTTAAGCCAGACCTGATCATTTTTCTGGAGGAAGGAAAAGAGTCCTGGAATATGAAGAGACATGAGATG
GTG
GAAGAATCCCCAGTTATATGTTCTCATTTTGCTCAAGATCTTTGGCCAGAGCAGGGCATAGAAGATT
CT
TTCCAAAAAGTGATATTGAGAAGGTATGAAAAATGTGGACATGAGAATTTACACTTAAAAATTGGTTA
T
ACCAATGTGGATGAGTGTAAGGTGCACAAAGAAGGTTATAATAAACTTAACCAGAGTTTGACAACTACA
CAG
AGCAAAGTATTTCAACGTGGCAAATATGCAAATGTCTTTCATAAATGTTCAAATTCAAACAGACATA
AG
ATAAGGCATACTGGAAAGAAACATTTGCAATGTAAAGAATACGTCAGATCATTTTGCATGCTTTCACA
C
CTATCTCAACATAAAAGAATTTATACTAGAGAGAATTCCTACAAATGTGAAGAAGGTGGCAAAGCTTTT
AAC
TGGTCCTCAACCCTTACTTATTATAAGAGTGCTCATACTGGAGAGAAACCCTACAGATGTAAAGAAT
GT
GGCAAAGCCTTTAGTAAGTTCTCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAATCCTA
C
AAATGTGAAGAATGTGGCAAGGCTTTTAACCAATCTGCAATCCTTACTAAACATAAGATAATTCATACT
GGA
GAGAAACCCAACAAATGTGAAGAATGTGGCAAAGCCTTTAGTAAGGTCTCGACTCTTACTACACATA
AG
GCAATTCATGCTGGAGAGAAGCCCTACAAATGTAAAGAATGTGGCAAAGCCTTCAGTAAGGTCTCAAC
C
CTTATTACACATAAGGCAATTCATGCTGGAGAGAAGCCCTACAAATGTAAAGAATGTGGCAAAGCCTTT
AGT
AAGTTCTCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAAT
GC
GGCAAAGCCTATAAGTGGCCCTCAACCCTTAGTTATCATAAGAAAATTCATACTGGAGAGAAACCCTA
C
AAATGTGAAGAATGTGGCAAAGGTTTTAGTATGTTCTCAATCCTTACTAAACATGAGGTCATTCATACT
GGA
GAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCAACTGGTCCTCAAACCTTATGGAACATA
AG
AAAATTCACACTGGAGAGACACCCTACAAATGTGAAGAATGTGGCAAAGGCTTTAGTATGTTCTCAAT
C
CTTACTAAACATAAGGTAATTCATAATGGAGAGAAACCCTACAAATGTGAAGAATGTGATAAGGCAACT
CAT
GCTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCAACTGGTCCTCAAACCTTATGG
AA
CATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAAGCTTCAGTACATT
C
TCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAA
GCC
TATAAGTGGTCCTCAACCCTTAGTTATCATAAGAAAATTCATACTGTAGAGAAACCCTACAAATGTG
AA
GAATGTGGCAAAGCTTTTAACCAATCTGCAATTCTTATTAAACATAAGAGAATTCATACTGGTGAGAA
A
CCCTACAAATGTGAAGAATGTGGCAAAACCTTTAGTAAGGTCTCAACCCTTACTACACATAAGGCAATT
CAT
GCTGGAGAGAAGCCCTACAAATGTAAAGAATGTGGCAAAACCTTTATTAAGGTCTCAACCCTTACTA
CA
CATAAGGCAATTCATGCTGGAGAGAAGCCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGTAAGTT
C
TCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAA
GCT
TTCAACTGGTCCTCAAACCTTATGGAACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTG
AA
GAATGTGGCAAAAGCTTTAGTACATTCTCAGTCCTTACTAAACATAAGGTAATTCATACTGGAGAGAA
A
CCCTACAAATGTGAAGAATGTGGCAAAGCCTATAAGTGGTCCTCAACCCTTAGTTATCATAAGAAAATT
CAT
ACTGTAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCGATCTGCAATCCTTATTA
AA
CATAAGAGAATTCATACTGATGAGAAACCCTACAAATGTGAAGAATGTGGCAAAACCTTTAGTAAGGT
C
TCAACCCTTACTACACATAAGGCAATTCATGCTGGAGAAAAGCCCTACAAATGTAAAGAATGTGGCAAA
GCC
TTTAGTAAGTTCTCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTG
AA
GAATGTGGCAAAGCCTATAAATGGCCCTCAACCCTTAGTTATCATAAGAAAATTCATACTGGAGAGAA
A
CCCTACAAATGTGAAGAATGTGGCAAAGGTTTTAGTATGTTCTCCATCCTTACTAAACATGAGGTAATT
CAT
ACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCAGCTGGTTGTCAGTCTTTAGTA
AA
CATAAGAAAACTCATGCTGGAGAGAAATTCTACAAATGTGAAGCATGTGGCAAAGCCTATAAGTCATC
C
TCAACCCTTAGTTATCATAAGAAAATTCATACTGAAGAGAAACCTTACAAATATGAAGAATGTGGCAAA
GGC
TTTAGTACATTCTCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTG
AA
GAATGTGGCAAAGCTTTCAACTGGTCATCAAACCTTATGGAACATAAGAAAATTCACACTGGAGAGAC
A
CCCTACAAATGTGAAGAATGTGACAAAGCCTTCAGCTGGCCCTCAAGCCTTACTGAACATAAGGCAACT
CAT
GCTGGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCAGCTGGCCCTCAAGACTTACTG
AA
CATAAGGCAACTCATGCTGGAGAGGAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCAACTGGTC
C
TCAAACCTTATGGAACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAA
AGC
TTTAGTACGTTCTCAATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTG
AA
GAATGTGGCAAAGCCTATAAGTGGTCCTCAACCCTTAGTTATCATAAGAAAATTCATACTGTAGAGAA
A
CCCTACAAATGTGAAGAATGTGGCAAAGGCTTTGTTATGTTCTCAATCCTTGCAAAACATAAGGTAATT
CAT
ACTGGAGAGAAACTCTACAAATGTGAAGAATGTGGCAAAGCCTATAAGTGGCCCTCAACCCTTAGAT
AT
CACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGTACGTT
C
TCAATCCTCACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAA
GCC
TTCAGCTGGTTATCAGTCTTCAGTAAACATAAGAAAATTCATACTGGAGAGAAACTCTAG


Translation (1280 aa):
MGSLTFRDVAIEFSLEEWQCLDTAQQNLYRNVMLENYRNLVFLGIAAFKPDLIIFLEEGKESWNMKRHEM
V
EESP
VICSHFAQDLWPEQGIEDSFQKVILRRYEKCGHENLHLKIGYTNVDECKVHKEGYNKLNQSLTTT
Q
SKVFQRGKYANVFHKCSNSNRHKIRHTGKKHLQCKEYVRSFCMLSHLSQHKRIYTRENSYKCEEGGKAF
N
WSSTLTYYKSAHTGEKPYRCKECGKAFSKFSILTKHKVIHTGEKSYKCEECGKAFNQSAILTKHKIIHT
G
EKPNKCEECGKAFSKVSTLTTHKAIHAGEKPYKCKECGKAFSKVSTLITHKAIHAGEKPYKCKECGKAF
S
KFSILTKHKVIHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKPYKCEECGKGFSMFSILTKHEVIHT
G
EKPYKCEECGKAFNWSSNLMEHKKIHTGETPYKCEECGKGFSMFSILTKHKVIHNGEKPYKCEECDKAT
H
AGEKPYKCEECGKAFNWSSNLMEHKRIHTGEKPYKCEECGKSFSTFSILTKHKVIHTGEKPYKCEECGK
A
YKWSSTLSYHKKIHTVEKPYKCEECGKAFNQSAILIKHKRIHTGEKPYKCEECGKTFSKVSTLTTHKAI
H
AGEKPYKCKECGKTFIKVSTLTTHKAIHAGEKPYKCKECGKAFSKFSILTKHKVIHTGEKPYKCEECGK
A
FNWSSNLMEHKRIHTGEKPYKCEECGKSFSTFSVLTKHKVIHTGEKPYKCEECGKAYKWSSTLSYHKKI
H
TVEKPYKCEECGKAFNRSAILIKHKRIHTDEKPYKCEECGKTFSKVSTLTTHKAIHAGEKPYKCKECGK
A
FSKFSILTKHKVIHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKPYKCEECGKGFSMFSILTKHEVI
H
TGEKPYKCEECGKAFSWLSVFSKHKKTHAGEKFYKCEACGKAYKSSSTLSYHKKIHTEEKPYKYEECGK
G
FSTFSILTKHKVIHTGEKPYKCEECGKAFNWSSNLMEHKKIHTGETPYKCEECDKAFSWPSSLTEHKAT
H
AGEKPYKCEECGKAFSWPSRLTEHKATHAGEEPYKCEECGKAFNWSSNLMEHKRIHTGEKPYKCEECGK
S
FSTFSILTKHKVIHTGEKPYKCEECGKAYKWSSTLSYHKKIHTVEKPYKCEECGKGFVMFSILAKHKVI
H
TGEKLYKCEECGKAYKWPSTLRYHKKIHTGEKPYKCEECGKAFSTFSILTKHKVIHTGEKPYKCEECGK
A
FSWLSVFSKHKKIHTGEKL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser