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Report for CCDS54234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54234.1 Public Homo sapiens 19 ISYNA1 24 110 108 CCDS HistoryNCBI Gene:51477Re-query CCDS DB by CCDS ID:54234.1Re-query CCDS DB by GeneID:51477See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54234.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457269.8 ENSP00000415458.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457269.8Link to Ensembl Protein Viewer:ENSP00000415458.3Re-query CCDS DB by Nucleotide ID:ENST00000457269Re-query CCDS DB by Protein ID:ENSP00000415458
Original member Current member NCBI NM_001170938.2 NP_001164409.1 Accepted alive Link to Nucleotide Sequence:NM_001170938.2Link to Protein Sequence:NP_001164409.1Re-query CCDS DB by Nucleotide ID:NM_001170938Re-query CCDS DB by Protein ID:NP_001164409Link to BLAST:NP_001164409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164409.1 504 Q9NPH2-3 504 100% 0 0

Chromosomal Locations for CCDS 54234.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18434913 18435117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435266 18435483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435563 18435676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435757 18435921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436032 18436247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436330 18436479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436684 18436877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436973 18437105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18437860 18437979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGAGGCCGCCGCCCAGTTCTTCGTCGAGAGCCCGGACGTGGTCTACGGCCCCGAGGCCATCGAGGCGC
AATACGAGTACCGGACGACGCGCGTCAGCCGCGAGGGTGGCGTTCTCAAGGAGGCCAACTACTACGGCTC
GCTGACTCAGGCGGGCACCGTGAGCCTGGGCCTGGACGCCGAGGGCCAGGAGGTGTTCGTACCCTTCAGC
GCGGTGCTGCCCATGGTGGCGCCCAACGACCTCGTGTTCGATGGCTGGGACATCTCGTCGCTGAACCTGG
CCGAGGCGATGCGGCGCGCGAAGGTGCTGGACTGGGGGCTGCAGGAGCAACTGTGGCCGCACATGGAGGC
CCTGCGGCCCCGGCCTTCTGTTTACATCCCCGAATTCATCGCGGCCAACCAGAGCGCGCGCGCGGACAAC
CTCATCCCAGGCTCGCGTGCGCAGCAGCTGGAGCAGATCCGCAGGGACATCCGAGACTTCCGGTCTAGCG
CGGGGCTGGACAAAGTCATAGTGCTGTGGACGGCGAACACGGAGCGCTTCTGTGAGGTGATTCCAGGCCT
CAACGACACAGCCGAGAACCTGCTGCGCACCATTGAGCTCGGTCTGGAGGTGTCGCCCTCCACGCTCTTC
GCCGTGGCCAGCATCCTGGAGGGCTGTGCCTTCCTCAATGGGTCTCCGCAGAACACCCTGGTGCCCGGAG
CTCTTGAGCTCGCGTGGCAGCACCGGGTTTTTGTGGGCGGAGATGACTTCAAGTCAGGCCAGACCAAAGT
CAAGTCCGTGCTTGTGGACTTCCTCATTGGCTCCGGCCTCAAGACCATGTCCATCGTGAGTTACAACCAC
CTGGGCAACAACGATGGGGAGAACCTATCGGCGCCATTGCAGTTCCGCTCTAAGGAGGTGTCCAAGAGCA
ACGTGGTGGACGACATGGTGCAGAGCAACCCAGTGCTCTATACGCCCGGCGAAGAGCCTGACCACTGCGT
GGTCATCAAGTATGTGCCGTACGTGGGTGACAGCAAGCGCGCGCTGGATGAGTATACCTCGGAGCTGATG
CTGGGCGGAACCAACACACTGGTGCTGCACAACACGTGTGAGGACTCGCTGCTGGCCGCACCCATCATGC
TGGACCTAGCGCTGCTGACCGAGCTGTGCCAGCGCGTGAGCTTCTGCACTGACATGGACCCCGAGCCGCA
GACCTTCCACCCCGTGCTGTCCCTGCTCAGCTTCCTCTTCAAGGCGCCACTAGTGCCGCCCGGCAGCCCG
GTGGTCAATGCGCTTTTCCGCCAGCGCAGCTGCATCGAGAACATCCTCAGGGCCTGCGTGGGGCTCCCGC
CACAGAACCACATGCTCCTGGAACACAAAATGGAGCGCCCAGGGCCCAGCCTCAAGCGAGTTGGACCCGT
GGCTGCCACCTACCCTATGTTGAACAAGAAAGGACCGGTACCCGCTGCCACCAATGGCTGCACCGGTGAT
GCCAATGGGCATCTGCAAGAGGAGCCCCCAATGCCCACCACCTGA

Translation (504 aa):
MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKEANYYGSLTQAGTVSLGLDAEGQEVFVPFS
AVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADN
LIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLF
AVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNH
LGNNDGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELM
LGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSP
VVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNGCTGD
ANGHLQEEPPMPTT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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