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Report for CCDS54158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54158.1 Public Homo sapiens 17 PRR29 24 110 108 CCDS HistoryNCBI Gene:92340Re-query CCDS DB by CCDS ID:54158.1Re-query CCDS DB by GeneID:92340See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412177.6 ENSP00000400986.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412177.6Link to Ensembl Protein Viewer:ENSP00000400986.1Re-query CCDS DB by Nucleotide ID:ENST00000412177Re-query CCDS DB by Protein ID:ENSP00000400986
Original member Current member NCBI NM_001164257.2 NP_001157729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164257.2Link to Protein Sequence:NP_001157729.1Re-query CCDS DB by Nucleotide ID:NM_001164257Re-query CCDS DB by Protein ID:NP_001157729Link to BLAST:NP_001157729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157729.1 189 P0C7W0-1 189 100% 0 0

Chromosomal Locations for CCDS 54158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63998365 63998424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63998707 63998782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63998968 63999074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64001084 64001310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64001467 64001537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64001733 64001761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCCTCTGGGGCGGGCGGAAGCTGGGGTCGCTCCCCACCGCAGAGCGCAGTCCCGACGCCCTGGGTCA
CCTTCCTGCAGCCCCTCTCGTGGGCCGTCCCACCTGCGCCCCCGCAGCCAGGCCGCGTGAAGGAAGACCT
GCTGGAACTGATGATGCTGCAGAACGCGCAGATGCACCAGCTGCTGCTGAGTCGCCTGGTGGCTGGAGCG
CTGCAGCCCCGGCCTGCCTCGCCCTGCCCTCAGGTCTACCTGGAGGTTCCACAGGAAGAGCCTGAGGAGG
AGGAGGAGGAGATGGACGTGCGGGAGAAAGGGCCTTTGGTGTTTCACCACCACTACTTGCCCTATTTGAT
GCCCTCCCCGGGTGCCCTGCTGCCCTGGCCAGCCCCCTTCTTCCCCACCCCTGCTTGTCAGCCCTACTTG
CAGGACGTGCCCAGGATTCAGCACTGTCCTGCCTCCAGGGAAAGGGAGGTGAGAGCTGTGCCCCCACCCC
CACCCCCCAGTGCCACAGGGACTGTGGGTGCTGATGTACCCCCGGCTTCAGACTACTATGATGCCGAGAG
CCTCCTATGA

Translation (189 aa):
MASGAGGSWGRSPPQSAVPTPWVTFLQPLSWAVPPAPPQPGRVKEDLLELMMLQNAQMHQLLLSRLVAGA
LQPRPASPCPQVYLEVPQEEPEEEEEEMDVREKGPLVFHHHYLPYLMPSPGALLPWPAPFFPTPACQPYL
QDVPRIQHCPASREREVRAVPPPPPPSATGTVGADVPPASDYYDAESLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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