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Report for CCDS53333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53333.1 Public Homo sapiens 1 CTH 22 109 92 CCDS HistoryNCBI Gene:1491Re-query CCDS DB by CCDS ID:53333.1Re-query CCDS DB by GeneID:1491See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411986.6 ENSP00000413407.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411986.6Link to Ensembl Protein Viewer:ENSP00000413407.2Re-query CCDS DB by Nucleotide ID:ENST00000411986Re-query CCDS DB by Protein ID:ENSP00000413407
Original member NCBI NM_001190463.1 NP_001177392.1 Updated not alive Link to Nucleotide Sequence:NM_001190463.1Link to Protein Sequence:NP_001177392.1Re-query CCDS DB by Nucleotide ID:NM_001190463Re-query CCDS DB by Protein ID:NP_001177392
Current member NCBI NM_001190463.2 NP_001177392.1 Accepted alive Link to Nucleotide Sequence:NM_001190463.2Link to Protein Sequence:NP_001177392.1Re-query CCDS DB by Nucleotide ID:NM_001190463Re-query CCDS DB by Protein ID:NP_001177392Link to BLAST:NP_001177392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177392.1 373 P32929-3 373 100% 0 0

Chromosomal Locations for CCDS 53333.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 70411416 70411583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70415956 70416037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70421566 70421675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70424285 70424416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70429794 70429851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70430317 70430394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70432083 70432235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70433828 70433949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70435125 70435177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70438688 70438826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70439101 70439127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCAGGAAAAAGACGCCTCCTCACAAGGTTTCCTGCCACACTTCCAACATTTCGCCACGCAGGCGATCC
AT
GTGGGCCAGGATCCAGAGCAATGGACCTCCAGGGCTGTAGTGCCCCCCATCTCACTGTCCACCACGTT
C
AAGCAAGGGGCGCCTGGCCAGCACTCGGGTTTTGAATATAGCCGTTCTGGAAATCCCACTAGGAATTGC
CTT
GAAAAAGCAGTGGCAGCACTGGATGGGGCTAAGTACTGTACAAACAGGTACTTCAGGCAAGTGGCAT
CT
GAATTTGGATTAAAGATTTCTTTTGTTGATTGTTCCAAAATCAAATTACTAGAGGCAGCAATTACACC
A
GAAACCAAGCTTGTTTGGATCGAAACCCCCACAAACCCCACCCAGAAGGTGATTGACATTGAAGGCTGT
GCA
CATATTGTCCATAAGCATGGAGACATTATTTTGGTCGTGGATAACACTTTTATGTCACCATATTTCC
AG
CGCCCTTTGGCTCTGGGAGCTGATATTTCTATGTATTCTGCAACAAAATACATGAATGGCCACAGTGA
T
GTTGTAATGGGCCTGGTGTCTGTTAATTGTGAAAGCCTTCATAATAGACTTCGTTTCTTGCAAAACTCT
CTT
GGAGCAGTTCCATCTCCTATTGATTGTTACCTCTGCAATCGAGGTCTGAAGACTCTACATGTCCGAA
TG
GAAAAGCATTTCAAAAACGGAATGGCAGTTGCCCAGTTCCTGGAATCTAATCCTTGGGTAGAAAAGGT
T
ATTTATCCTGGGCTGCCCTCTCATCCACAGCATGAGTTGGTGAAGCGTCAGTGTACAGGTTGTACAGGG
ATG
GTCACCTTTTATATTAAGGGCACTCTTCAGCATGCTGAGATTTTCCTCAAGAACCTAAAGCTATTTA
CT
CTGGCCGAGAGCTTGGGAGGATTCGAAAGCCTTGCTGAGCTTCCGGCAATCATGACTCATGCATCAGT
T
CTTAAGAATGACAGAGATGTCCTTGGAATTAGTGACACACTGATTCGACTTTCTGTGGGCTTAGAGGAT
GAG
GAAGACCTACTGGAAGATCTAGATCAAGCTTTGAAGGCAGCACACCCTCCAAGTGGAAGTCACAGCT
AG


Translation (373 aa):
MQEKDASSQGFLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNC
L
EKAVAALDGAKY
CTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGC
A
HIVHKHGDIILVVDNTFMSPYFQ
RPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS
L
GAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYP
GLPSHPQHELVKRQCTGCTG
M
VTFYIKGTLQHAEIFLKNLK
LFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLED
E
EDLLEDLDQALKAA
HPPSGSHS



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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