NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5266.1 Public Homo sapiens 6 WTAP 24 110 108 CCDS HistoryNCBI Gene:9589Re-query CCDS DB by CCDS ID:5266.1Re-query CCDS DB by GeneID:9589See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5266.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358372.8 ENSP00000351141.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358372.8Link to Ensembl Protein Viewer:ENSP00000351141.4Re-query CCDS DB by Nucleotide ID:ENST00000358372Re-query CCDS DB by Protein ID:ENSP00000351141
Original member Current member EBI ENST00000621533.5 ENSP00000479438.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621533.5Link to Ensembl Protein Viewer:ENSP00000479438.1Re-query CCDS DB by Nucleotide ID:ENST00000621533Re-query CCDS DB by Protein ID:ENSP00000479438
Original member Current member NCBI NM_001270531.2 NP_001257460.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270531.2Link to Protein Sequence:NP_001257460.1Re-query CCDS DB by Nucleotide ID:NM_001270531Re-query CCDS DB by Protein ID:NP_001257460Link to BLAST:NP_001257460.1
Original member Current member NCBI NM_004906.5 NP_004897.2 Accepted alive Link to Nucleotide Sequence:NM_004906.5Link to Protein Sequence:NP_004897.2Re-query CCDS DB by Nucleotide ID:NM_004906Re-query CCDS DB by Protein ID:NP_004897Link to BLAST:NP_004897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257460.1 396 Q15007-1 396 100% 0 0
NP_004897.2 396 Q15007-1 396 100% 0 0

Chromosomal Locations for CCDS 5266.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159736266 159736295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159738990 159739045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159742088 159742146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159743665 159743792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159748191 159748369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159753460 159753614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159755028 159755611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGACCAACGAAGAACCTCTTCCCAAGAAGGTTCGATTGAGTGAAACAGACTTCAAAGTTATGGCAAGAG
ATGAGTTAATTCTAAGATGGAAACAATATGAAGCATATGTACAAGCTTTGGAGGGCAAGTACACAGATCT
TAACTCTAATGATGTAACTGGCCTAAGAGAGTCTGAAGAAAAACTAAAGCAACAACAGCAGGAGTCTGCA
CGCAGGGAAAACATCCTTGTAATGCGACTAGCAACCAAGGAACAAGAGATGCAAGAGTGTACTACTCAAA
TCCAGTACCTCAAGCAAGTCCAGCAGCCGAGCGTTGCCCAACTGAGATCAACAATGGTAGACCCAGCGAT
CAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAAT
GAACTGAGTGCCTGGAAGTTTACGCCTGATAGCCAAACAGGGAAAAAGTTAATGGCGAAGTGTCGAATGC
TTATCCAGGAGAATCAAGAGCTTGGAAGGCAGCTGTCCCAGGGACGTATTGCACAACTTGAAGCAGAGTT
GGCTTTACAGAAGAAATACAGTGAGGAGCTTAAAAGCAGTCAGGATGAACTGAATGACTTCATCATCCAG
CTTGATGAAGAAGTAGAGGGTATGCAGAGTACCATTCTAGTTCTGCAGCAGCAGCTGAAGGAGACACGCC
AGCAGTTGGCTCAGTACCAGCAGCAGCAGTCTCAGGCCTCTGCCCCAAGTACCAGCAGGACTACAGCTTC
TGAACCTGTAGAACAGTCAGAGGCCACAAGTAAAGACTGCAGTCGTCTGACAAACGGACCAAGTAATGGT
AGCTCCTCCCGCCAGAGGACGTCTGGGTCTGGATTTCACAGGGAGGGCAACACAACCGAAGATGACTTTC
CTTCTTCTCCAGGGAATGGTAATAAGTCCTCCAACAGCTCAGAGGAGAGAACTGGCAGAGGAGGTAGTGG
TTACGTAAATCAACTCAGTGCGGGGTATGAAAGTGTAGACTCTCCCACGGGCAGTGAAAACTCTCTCACA
CACCAATCAAATGACACAGACTCCAGTCATGACCCTCAAGAGGAGAAAGCAGTGAGTGGGAAAGGTAATC
GAACTGTGGGTTCCCGCCACGTTCAGAATGGCTTGGACTCAAGTGTAAATGTACAGGGTTCAGTTTTGTA
A

Translation (396 aa):
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESA
RRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
ELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
LDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNG
SSSRQRTSGSGFHREGNTTEDDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLT
HQSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH