NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52636.1 Public Mus musculus 8 Ogfod1 23 108 98 CCDS HistoryNCBI Gene:270086Re-query CCDS DB by CCDS ID:52636.1Re-query CCDS DB by GeneID:270086See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093301.8 ENSMUSP00000090991.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093301.8Link to Ensembl Protein Viewer:ENSMUSP00000090991.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093301Re-query CCDS DB by Protein ID:ENSMUSP00000090991
Original member NCBI NM_001093757.1 NP_001087226.1 Updated not alive Link to Nucleotide Sequence:NM_001093757.1Link to Protein Sequence:NP_001087226.1Re-query CCDS DB by Nucleotide ID:NM_001093757Re-query CCDS DB by Protein ID:NP_001087226
Current member NCBI NM_001093757.2 NP_001087226.1 Accepted alive Link to Nucleotide Sequence:NM_001093757.2Link to Protein Sequence:NP_001087226.1Re-query CCDS DB by Nucleotide ID:NM_001093757Re-query CCDS DB by Protein ID:NP_001087226Link to BLAST:NP_001087226.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087226.1 502 Q3U0K8-2 502 100% 0 0

Chromosomal Locations for CCDS 52636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94037289 94037442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94038965 94039110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94047272 94047318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94052075 94052175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94054604 94054720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94055253 94055344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94056044 94056157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94057716 94057795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94058050 94058363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94062967 94063089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94063469 94063527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94064179 94064340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGAACGGGAAGCGGCCGGCGGATCCTGGCCCAGCGCGGCCAATGAAGAAGGGAAAGAAGCAGGTATCGG
CAGAGTTTTCGGACGCTGTCACTGAAGAAATCCTGAGGAAGCAGGTGGCTGAGGCCTGGAGCTGCCGGAC
ACCGTTCAGCCATGAAGCTATTGCCTTGGACATGGATCCTTTCCTTCACTGTGTGATCCCAAACTTCATC
CAAAGCCAAGACTTCTTGGAAGGACTTCACAAAGAGCTTTTGAGCCTGGACTTCCATGAAAAGTACAATG
ATTTATATAAGTTCCAACAGTCTGATGATTTGAAGAACCGAAAAGAGCCCCATATCTCAGCTTTAAGGAA
ACTTATGTTTGAAGATTTTCGGGCCTGGCTTTCTAAGGTTTCCGGCATTGACCTAGAACCAACCATTGAC
ATGTCGTGTGCGAAATACGAGTTCACTGATGCTCTGCTCTGCCATGATGATGAACTGGAGGGGCGCCGGA
TCGCTTTCATTCTGTACCTGGTTCCTTCTTGGGACAGGGACTTGGGGGGCACCCTGGACCTTTATGACAC
TGATGAACACTTGCAGCCAAAGCAGATTGTCAAGTCTCTTATCCCTTCCTGGAACAAACTGGTTTTCTTT
GAAGTGTCTCCAGTATCCTTTCACCAGCATGAAATTTTATATGAGTGGATCAACCCTGCTTACCTGGAAA
TGGATTATCAAATGCAAATTCAAGAAGAATTTGAAGAAAGGTCTGAAATTCTCCTGAAGGAGTTTCTTAA
GCCTGAGAAATTTGCAGAGGTCTGTGAAGCCTTGGAGAAAGGAGATGTGGAATGGAAAAGCCATGGTCCC
CCAAACAAAAGGTTTTATGAGAAAGCAGAAGAAAATAACCTCCCTGACGTGCTGAAGGAATGCATGGGCC
TGTTCCGCTCTGAGGCGCTCTTCCTGCTGCTCTCCAACCTCACTGGCCTGAAGCTTCACTTCTTGGCCCC
TTCAGAAGATGATGAGACTGAGGAGAAAGGAGAGGGGGAGACAGCCAGTGCTGCTGCTGGCACTGAAGAA
GGGACTAGCCGACGCCCCTCGGGGCCAGAGAATAATCAGGTGGCCGCTGGCAGTCACAGTCAAGAGAACG
GTGAACAGGCAGACCCAGAAGCACAGGAAGAGGAAGCAAAGAAAGAATCGAGCGTTCCCATGTGCCAGGG
GGAGCTGAGGCGTTGGAAGACTGGCCATTACACATTAGTCCACGACAACACCAAGACTGAATTTGCCCTG
GACCTGTTTCTGTACTGTGGCTGTGAAGGCTGGGAGCCCGAATATGGCGGCTTTACCTCCTACATTGCTA
AAGGTGAAGATGAAGAGCTGCTCATAGTGAATCCAGAAAACAACTCTTTGGCGTTGGTCTACAGAGACAG
AGAAACGCTGAGGTTTGTGAAACACATCAACCACCGCAGCCTAGAGCAGAGCAAAGCCTTCCCAAGCAGA
AGCGGCTTCTGGGACTTCGCATTCATCTACTATGAGTAA

Translation (502 aa):
MNGKRPADPGPARPMKKGKKQVSAEFSDAVTEEILRKQVAEAWSCRTPFSHEAIALDMDPFLHCVIPNFI
QSQDFLEGLHKELLSLDFHEKYNDLYKFQQSDDLKNRKEPHISALRKLMFEDFRAWLSKVSGIDLEPTID
MSCAKYEFTDALLCHDDELEGRRIAFILYLVPSWDRDLGGTLDLYDTDEHLQPKQIVKSLIPSWNKLVFF
EVSPVSFHQHEILYEWINPAYLEMDYQMQIQEEFEERSEILLKEFLKPEKFAEVCEALEKGDVEWKSHGP
PNKRFYEKAEENNLPDVLKECMGLFRSEALFLLLSNLTGLKLHFLAPSEDDETEEKGEGETASAAAGTEE
GTSRRPSGPENNQVAAGSHSQENGEQADPEAQEEEAKKESSVPMCQGELRRWKTGHYTLVHDNTKTEFAL
DLFLYCGCEGWEPEYGGFTSYIAKGEDEELLIVNPENNSLALVYRDRETLRFVKHINHRSLEQSKAFPSR
SGFWDFAFIYYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH