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Report for CCDS52424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52424.1 Public Mus musculus 7 9430038I01Rik 23 108 98 CCDS HistoryNCBI Gene:77252Re-query CCDS DB by CCDS ID:52424.1Re-query CCDS DB by GeneID:77252See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068996.12 ENSMUSP00000070550.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068996.12Link to Ensembl Protein Viewer:ENSMUSP00000070550.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068996Re-query CCDS DB by Protein ID:ENSMUSP00000070550
Original member Current member NCBI NM_029886.2 NP_084162.1 Accepted alive Link to Nucleotide Sequence:NM_029886.2Link to Protein Sequence:NP_084162.1Re-query CCDS DB by Nucleotide ID:NM_029886Re-query CCDS DB by Protein ID:NP_084162Link to BLAST:NP_084162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084162.1 107 Q9CX25 107 100% 0 0

Chromosomal Locations for CCDS 52424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 137376322 137376351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137387371 137387433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137387540 137387701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137410640 137410708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGGACAGCCTGGCGTCGGGCCGCTGGAGACGGCGGAGGACGGAGGAGCTGCCAGCGGCAGGGGACGCGA
AACGGGCGTGCAGGAGGTCAGAACCAGGTGGATATGAGTGCAGCGGCCACATGCTAACCACCTGTGCCCT
GCTGTCCTGGAGCACAGAGGACCAGGAGCCCAGGCCACGAGGCCTGCCTGCATCACAACCAGACTGTAGC
CAGGAGAGGCTGAGCTCAATGGTTCTGCAGAACGGTGGAAGGAGTTCGGCCCAGCCTTGCCTGAGGTGTA
TCTCGGGGGAGTCTGGCCATTTTAATCATACCGACAATCATTAG

Translation (107 aa):
MDSLASGRWRRRRTEELPAAGDAKRACRRSEPGGYECSGHMLTTCALLSWSTEDQEPRPRGLPASQPDCS
QERLSSMVLQNGGRSSAQPCLRCISGESGHFNHTDNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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