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Report for CCDS5242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5242.1 Public Homo sapiens 6 FBXO5 24 110 108 CCDS HistoryNCBI Gene:26271Re-query CCDS DB by CCDS ID:5242.1Re-query CCDS DB by GeneID:26271See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229758.8 ENSP00000229758.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229758.8Link to Ensembl Protein Viewer:ENSP00000229758.3Re-query CCDS DB by Nucleotide ID:ENST00000229758Re-query CCDS DB by Protein ID:ENSP00000229758
Original member Current member NCBI NM_012177.5 NP_036309.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012177.5Link to Protein Sequence:NP_036309.1Re-query CCDS DB by Nucleotide ID:NM_012177Re-query CCDS DB by Protein ID:NP_036309Link to BLAST:NP_036309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036309.1 447 Q9UKT4-1 447 100% 0 0

Chromosomal Locations for CCDS 5242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 152971163 152971414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 152972272 152972454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 152973046 152973136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 152974907 152975621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 152982857 152982959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGAGCCGGCGCCCCTGCAGCTGCGCCCTACGGCCACCCCGCTGCTCCTGCAGCGCCAGCCCCAGCGCAG
TGACAGCCGCCGGGCGCCCTCGACCCTCGGATAGTTGTAAAGAAGAAAGTTCTACCCTTTCTGTCAAAAT
GAAGTGTGATTTTAATTGTAACCATGTTCATTCCGGACTTAAACTGGTAAAACCTGATGACATTGGAAGA
CTAGTTTCCTACACCCCTGCATATTTGGAAGGTTCCTGTAAAGACTGCATTAAAGACTATGAAAGGCTGT
CATGTATTGGGTCACCGATTGTGAGCCCTAGGATTGTACAACTTGAAACTGAAAGCAAGCGCTTGCATAA
CAAGGAAAATCAACATGTGCAACAGACACTTAATAGTACAAATGAAATAGAAGCACTAGAGACCAGTAGA
CTTTATGAAGACAGTGGCTATTCCTCATTTTCTCTACAAAGTGGCCTCAGTGAACATGAAGAAGGTAGCC
TCCTGGAGGAGAATTTCGGTGACAGTCTACAATCCTGCCTGCTACAAATACAAAGCCCAGACCAATATCC
CAACAAAAACTTGCTGCCAGTTCTTCATTTTGAAAAAGTGGTTTGTTCAACATTAAAAAAGAATGCAAAA
CGAAATCCTAAAGTAGATCGGGAGATGCTGAAGGAAATTATAGCCAGAGGAAATTTTAGACTGCAGAATA
TAATTGGCAGAAAAATGGGCCTAGAATGTGTAGATATTCTCAGCGAACTCTTTCGAAGGGGACTCAGACA
TGTCTTAGCAACTATTTTAGCACAACTCAGTGACATGGACTTAATCAATGTGTCTAAAGTGAGCACAACT
TGGAAGAAGATCCTAGAAGATGATAAGGGGGCATTCCAGTTGTACAGTAAAGCAATACAAAGAGTTACCG
AAAACAACAATAAATTTTCACCTCATGCTTCAACCAGAGAATATGTTATGTTCAGAACCCCACTGGCTTC
TGTTCAGAAATCAGCAGCCCAGACTTCTCTCAAAAAAGATGCTCAAACCAAGTTATCCAATCAAGGTGAT
CAGAAAGGTTCTACTTATAGTCGACACAATGAATTCTCTGAGGTTGCCAAGACATTGAAAAAGAACGAAA
GCCTCAAAGCCTGTATTCGCTGTAATTCACCTGCAAAATATGATTGCTATTTACAACGGGCAACCTGCAA
ACGAGAAGGCTGTGGATTTGATTATTGTACGAAGTGTCTCTGTAATTATCATACTACTAAAGACTGTTCA
GATGGCAAGCTCCTCAAAGCCAGTTGTAAAATAGGTCCCCTGCCTGGTACAAAGAAAAGCAAAAAGAATT
TACGAAGATTGTGA

Translation (447 aa):
MSRRPCSCALRPPRCSCSASPSAVTAAGRPRPSDSCKEESSTLSVKMKCDFNCNHVHSGLKLVKPDDIGR
LVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIVQLETESKRLHNKENQHVQQTLNSTNEIEALETSR
LYEDSGYSSFSLQSGLSEHEEGSLLEENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEKVVCSTLKKNAK
RNPKVDREMLKEIIARGNFRLQNIIGRKMGLECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTT
WKKILEDDKGAFQLYSKAIQRVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGD
QKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDCS
DGKLLKASCKIGPLPGTKKSKKNLRRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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