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Report for CCDS52311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52311.1 Public Mus musculus 7 Pcf11 23 108 98 CCDS HistoryNCBI Gene:74737Re-query CCDS DB by CCDS ID:52311.1Re-query CCDS DB by GeneID:74737See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119954.8 ENSMUSP00000113717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119954.8Link to Ensembl Protein Viewer:ENSMUSP00000113717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119954Re-query CCDS DB by Protein ID:ENSMUSP00000113717
Original member Current member NCBI NM_029078.3 NP_083354.3 Accepted alive Link to Nucleotide Sequence:NM_029078.3Link to Protein Sequence:NP_083354.3Re-query CCDS DB by Nucleotide ID:NM_029078Re-query CCDS DB by Protein ID:NP_083354Link to BLAST:NP_083354.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083354.3 1553 G3X9Z4 1553 100% 0 0

Chromosomal Locations for CCDS 52311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92644562 92644777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92645990 92646025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92646430 92646522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92646928 92647083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92647942 92648125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92648926 92649031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92649456 92649575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92653150 92653249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92657308 92658866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92659798 92659888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92660000 92660180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92660959 92662076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92663462 92663656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92663967 92664155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92665740 92665865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92669429 92669620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4662 nt):
ATGTCAGAGCAGACGCCGGCGGAGGCCGGGGCTGCGGGGGCCCGGGAGGACGCCTGTCGGGATTATCAGT
CGTCGCTGGAAGACCTGACCTTCAATAGCAAACCGCACATCAATATGCTGACCATTCTAGCCGAGGAGAA
CCTGCCCTTCGCCAAGGAGATCGTCTCTCTCATCGAGGCCCAAACCGCCAAGGCTCCTTCCTCAGAGAAG
CTTCCAGTTATGTACCTTATGGATTCTATCGTGAAAAATGTTGGAAGAGAATATCTCACTGCCTTTACTA
AAAATCTAGTTGCAACATTTATTTGTGTGTTTGAAAAGGTGGATGAAAATACTAGAAAAAGTTTATTTAA
ATTACGTTCCACATGGGATGAAATATTCCCTTTGAAGAAACTTTATGCCTTGGATGTCAGAGTCAATTCA
TTAGATCCTGCTTGGCCTATTAAACCTCTGCCTCCTAATGTGAATACATCTAGCATCCATGTGAATCCCA
AATTTTTAAATAAATCGCCTGATGAGCCTTCAACACCTGGCACAGTGGTCAGTTCCCCCAGTATCTCCAC
TCCTCCCATTGTACCTGATATACAAAAGAATCTTACCCAAGAACAACTAATAAGGCAACAGTTACTGGCA
AAACAAAAACAGTTGTTAGAACTTCAGCAGAAAAAGCTGGAGCTTGAGTTAGAACAAGCTAAGGCACAGC
TGGCAGTATCTCTGAGTGTTCAGCAGGAAACAGCCAACTTGGGTCCTGGATCAGTGCCGTCTAAATTACA
TGTTCCACAAATTCCCACAATGGCTGTTAAAACTCCCCATCAGGTCCCTGTACAACCTGACAAAAGCCGA
GCAGGTCCATCCTTACAAATGCAAGACTTGAAAGGAACTAACCGGGATCCCCGTCTTAACAGGATGAGCC
AACATTCTTCCCATGGCAAAGAGCAGAGTCATAGGAAAGAATTTGTAATGAACACAATAAACCAGTCTGA
TATTAAAACAAGTAAGAATGTACCCTCTGAAAAGCTAAATTCATCCAAACAAGAAAAAAGTAAATCAGGT
GAAAGAATAACCAAGAAAGAACTTGACCAGTTAGATTCTAAATCCAAATCTAAGTCTAAATCACCATCAC
CTTTGAAAAACAAATTATCCCACACAAAAGACTTGAAAAATCAAGACTCTGAAAGTATGAGGTTGTCTGA
TATGAGTAAGAGAGATCCACGATTAAAGAAGCATCTTCAGGATAAAGCTGAGGGCAAAGATGAAGATGTA
AAAGAAAAGAGAAAAACTGCAGAAAAGAAGGAGAAAGATGAGCACATGAAATCATCTGAACACAGGGTGA
TTGGAAGTAGAAGTAAAATCATAAATGGCATTGTCCAAAAACAAGACATGGTTACAGAGGAGTTGGAAAA
ACAGGGGACAAAACCAGGGAGATCGAGTACTAGAAAGAGATCAAGATCAAGGTCACCTAAGTCTCGGTCA
CCAATTATACATTCCCCAAAGAGAAGAGATAGACGGTCACCCAAACGAAGGCAAAGAAGTATGTCTCCCA
ATTTGGCACCCAAAGCTGGAAAGATGCGTCAGTCGGGACTAAAACAGTCACATATGGAAGAATTCCCACC
ACCTTCCAGGGAAGAAAGAAATATTAAGAGAAGTGCTAAGCAGGATGTTAGAGATCCCAGACGACTGAAA
AAGATGGATGAGGACCGGCCTCAAGAAACTGCAGGTCAACATTCTATGAAGTCAGGTGGTGACCCAAAGG
AGAATATAGAGAATTGGCAAAGCTCTAAGTCTGCCAAAAGATGGAAATCTGGCTGGGAAGAAAATAAAAG
CTTGCAGCAGGGTGATGAACATAGTAAACCTCCTCATCTAAGGCATAGGGAGAGCTGGTCAAGCACTAAA
GGGATCTTGTCACCTCGAGCCCCCAAGCAGCAGCACCGACTAAGTGTAGATGCCAATCTTCAAATTCCTA
AAGAGTTAACTCTTGCAAGCAAAAGAGAATTGCTTCAAAAGACGAGCGAACGTTTAGCATCTGGTGAAAT
TACACAGGATGAGTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAGTATCAAGAAGGTGTACGA
GAGGAGCAGAGATCACCATTCAATGATCGTTTTCCACTTAAGCGACCTAGATATGAAGATTCAGATAAAC
CATTTGTAGATGGCCCAGCATCAAGATTTGCTGGCCTTGATACAAATCAGCGACTTACAGCTCTAGCTGA
AGACCGACCATTATTTGATGGACCTGGTAGGCCATCTGTGACGAGAGATGGCCCAGCCAAGATGATTTTT
GAAGGACCTAATAAATTAAGCCCTAGAATTGATGGACCTCCTACACCAGGTTCTCTTCGGTTTGATGGGT
CACCAGGACAAATGGGGGGAGGAGGCCCTATGAGATTTGAAGGACCACAAGGTCAGTTAGGAGGTGGGTG
TCCTTTGAGATTTGAAGGTCCTCCAGGACCAGTAGGAACACCTCTGCGGTTTGAAGGGCCAATTGGTCAA
GGAGGAGGAGGTGGTTTTCGATTTGAAGGTTCACCTAGTTTGAGGTTTGAGGGATCTACAGGTGGTTTAC
GATTTGAAGGACCAGGGGGTCAGCCCGTGGGTGGTCTCAGGTTTGAAGGACATCGTGGTCAACCTGTGGG
TGGTCTCAGGTTTGAAGGACCTCATGGACAGCCTGTGGGCAGTCTTAGATTTGATAATCCTCGAGGTCAG
CCTGTAGGAGGACTTAGATTTGAAGGGGGTCATGGTCCATCAGGGGCTGCAATTAGGTTTGATGGGCCTC
ATGGTCAGCCAGGTGGTGGTGGTGGTATCAGATTTGAGGGCCCTTTGCTACAGCAAGGAGTTGGAATGAG
GTTTGAGGGTCCCCATGGTCAGTCTGTAGCTGGTCTGAGATTTGAAGGACATAATCAACTAGGTGGGAAC
CTTAGGTTTGAGGGACCACATGGTCAACCAGGGGTTGGGATCAGGTTTGAAGGACCTATAGTTCAACAAG
GAGGTGGAATGAGGTTTGAAGGTCCTGTACCAGGAGGTGGCCTGAGAATTGAAGGGCCTCTGGGTCAAGG
TGGTCCTAGATTTGAAGGTTGTCACTCTTTAAGGTTTGATGGACAGCCAGGTCAACCATCACTTTTGCCA
AGATTTGATGGATTACATGGCCAGCCAGGTCCTAGATTTGAAAGAACTGGTCAGCCAGGTCCACAGAGGT
TTGATGGACCACCTGGACAGCAGGTTCAACCAAGATTTGATGGTGTACCTCAAAGATTTGATGGGCCACA
ACACCAGCAAGCATCAAGATTTGATATTCCTCTTGGTCTACAAGGAACTCGATTTGACAATCATCCTTCA
CAAAGGATTGAATCTTTCAATCATTCTGGCCCATATAATGATCCACCTGGCAATACTTTTAATGTTCCAT
CTCAAGGATTACAGTTCCAAAGACACGAACAAATATTTGATACACCTCAAGGACCAAATTTTAATGGACC
ACATGGCCCTGGAAATCAGAATTTCCCAAATCCCATTAACAGAGCTTCTGGACACTATTTTGATGAAAAG
AATCTTCAGAGTTCTCAGTTTGGAAACTTTGGCAATTTGCCTACACCAATATCAGTAGGAAATATTCAGG
CATCTCAACAGGTTCTTACTGGTGTTGCTCAGCCAGTAGCGTTTGGCCAAGGACAACAGTTCTTACCAGT
TCATCCACAGAATCCTGGAGCTTTTATTCAAAATCCTTCAGGCGGTCTTCCCAAGGCATATCCTGATAAT
CATCTCAGTCAGGTGGATGTAAACGAATTGTTTTCAAAACTGCTAAAAACAGGAATTCTCAAATTGTCAC
AGCCTGATTCAGCTACAGCACAGGTAACCGAGGCTGTTGCTCAGCCTCCCCCTGAGGAGGACGAGGATCA
GAATGAAGATCAGGATGTTCCAGATCTTACCAATTTCACCATTGAAGAATTGAAGCAACGTTATGACAGT
GTTATAAACCGGCTGTACACTGGGATTCAATGTTACTCGTGTGGAATGAGGTTCACGACATCCCAGACAG
ATGTTTATGCAGATCACTTGGATTGGCATTATCGGCAAAACAGAACCGAGAAAGATGTTAGCAGAAAAGT
CACTCATAGACGTTGGTACTACAGTCTAACAGATTGGATAGAATTTGAAGAAATAGCTGATCTGGAAGAA
CGTGCAAAAAGCCAGTTTTTTGAAAAGGTTCATGAAGAGGTTGTCCTTAAAACTCAGGAGGCTGCTAAAG
AAAAGGAGTTCCAAAGTGTACCTGCTGGACCAGCTGGAGCAGTTGAGAGTTGTGAAATCTGTCAAGAACA
ATTTGAACAGTACTGGGATGAAGAGGAGGAAGAATGGCACTTAAAAAATGCTATTAGAGTAGACGGAAAG
ATTTACCATCCATCATGTTATGAAGATTATCAAAATACATCTTCATTTGATTGCACACCATCTCCCAGCA
AGACACCAGTTGAAAACCCTTTGAACATTATGTTGAACATTGTCAAAAACGAATTGCAAGAACCCTGTGA
AAGTCCCAAAGTTAAGGAAGAACAAATTGATGCCCCACCAGCTTGTTCAGAAGAAAGTGTAGCAACACCC
ACTGAAATTAAAACAGAAAGTGATACAGTTGAGTCAGTTTAA

Translation (1553 aa):
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEK
LPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNS
LDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLA
KQKQLLELQQKKLELELEQAKAQLAVSLSVQQETANLGPGSVPSKLHVPQIPTMAVKTPHQVPVQPDKSR
AGPSLQMQDLKGTNRDPRLNRMSQHSSHGKEQSHRKEFVMNTINQSDIKTSKNVPSEKLNSSKQEKSKSG
ERITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQDSESMRLSDMSKRDPRLKKHLQDKAEGKDEDV
KEKRKTAEKKEKDEHMKSSEHRVIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKRSRSRSPKSRS
PIIHSPKRRDRRSPKRRQRSMSPNLAPKAGKMRQSGLKQSHMEEFPPPSREERNIKRSAKQDVRDPRRLK
KMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSAKRWKSGWEENKSLQQGDEHSKPPHLRHRESWSSTK
GILSPRAPKQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVR
EEQRSPFNDRFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMIF
EGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
GGGGGFRFEGSPSLRFEGSTGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGSLRFDNPRGQ
PVGGLRFEGGHGPSGAAIRFDGPHGQPGGGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGHNQLGGN
LRFEGPHGQPGVGIRFEGPIVQQGGGMRFEGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLP
RFDGLHGQPGPRFERTGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPS
QRIESFNHSGPYNDPPGNTFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRASGHYFDEK
NLQSSQFGNFGNLPTPISVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNPSGGLPKAYPDN
HLSQVDVNELFSKLLKTGILKLSQPDSATAQVTEAVAQPPPEEDEDQNEDQDVPDLTNFTIEELKQRYDS
VINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEE
RAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGK
IYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATP
TEIKTESDTVESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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